Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0498 ATGGAGGAAATTACTACTCATGAGTACTTGATGTGGATGAAGAGAAAGCAAATATTGAAGTCACATATTCAAGCACCAATATTTGCAGCCTGCAACAACAACTCTTGGGAGGAAAGGGCTTTTGCAGAAGATGCAGCTAGGATACTTGGTGGGTGCATGTGGCCTCCAAGATCTTACTCATGTCACTTCTGTAAAAGAGAGTTCAGGTCTGCTCAAGCTCTTGGGGGCCACATGAATGTGCACAGAAGGGACAGAGCTAGGCTCAAACAAAATCTTAGCCAACCCCTTCAAAATTCTAATCATCACAAAGATCATAATTTTACAGCAACTGGACACTTGACTTCTAGGCCCTCAACAATATCCACACGAGAAAATTCTTGTAAGGGGTGTCCTGATTCTGAACCAAAAGTGAAAGTCAATGCAAAGGAAGAATTTTTAAAAGGTTTTGGTATTCATGATTATGTTGAAACTACTTTATCTGTGGGACAAAATTCTGTTTTTAGCAAAAAAGTGGCAACTGATTCATGTGGAGAGCTTGAAGAAATCAGTTATAAAAGACCAAAGATTTCTATTCCTGTCATCCTCAAGCCATGTTCAAATGATAGAGGACTAACATTCCAATCTGCAGAATTTGTACTTGGACTTAAGCCTGGAATGGAAGACTTGGATCTTGAACTCAGGTTGGGGAAACCTCAGAAAGTTTAG 705 0.3986 MEEITTHEYLMWMKRKQILKSHIQAPIFAACNNNSWEERAFAEDAARILGGCMWPPRSYSCHFCKREFRSAQALGGHMNVHRRDRARLKQNLSQPLQNSNHHKDHNFTATGHLTSRPSTISTRENSCKGCPDSEPKVKVNAKEEFLKGFGIHDYVETTLSVGQNSVFSKKVATDSCGELEEISYKRPKISIPVILKPCSNDRGLTFQSAEFVLGLKPGMEDLDLELRLGKPQKV* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0498 234 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 234 - -
Lja6g0498 234 MobiDBLite consensus disorder prediction 95 135 - -
Lja6g0498 234 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Lja6g0498 234 PANTHER OS07G0101800 PROTEIN 4 234 - -
Lja6g0498 234 MobiDBLite consensus disorder prediction 95 128 - -
Lja6g0498 234 Gene3D Classic Zinc Finger 55 116 - -
Lja6g0498 234 SUPERFAMILY beta-beta-alpha zinc fingers 56 86 IPR036236 -
Lja6g0498 234 Pfam C2H2-type zinc finger 59 83 - -
Lja6g0498 234 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 86 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0498 Lja-Chr6 12043833 12045376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0498 34 96 C2H2 Transcription Factor Family AT2G37740 73.016 8.40e-26 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja6g0498 zf-C2H2_6 3.5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0498 - - aprc:113851273 311.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0498 6 12043833 12045376 Lja6g0498 6 12043833 12045376 ECH
Lja6g0498 6 12043833 12045376 Lja6g0498 6 12043833 12045376 PCT