Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0492 ATGGCTGGGATTTGCTGTGGTGTCGTCGGGGAGGGAGAGGCCGCTGCTGCGGCGACCTCTCGACCTTCCCGAAGACGGAGTTTAGACCTCCTCCCGGGGTTTAAATACCTCGCGGATGTCGCCCTCCCGCTTCCGGAAACTTCCCGGAAACACACAAGACTAGATCTCTGCGCCGCCCCGAGGGACGGCGAAGATGAATTCACCAGCGGCTCCTCCAAAAAGGTGAAGGAATCCAAGGGAAACAACGACGACGTCGTTTTGAAACCGAAACAGTCCACCGTTTCTTCTTCTTCAACGGAGGGGAATTTTGAAGCTGAAGAGTGTCCGAAATTCGGAGTCACTTCTGTCTGTGGCAGGAGAAGGGACATGGAAGATTCAGTCTCGGTTCGCCCTTCGTTCTCCGAGAGGGAAAACTTCCACTACTTCGGCGTTTTCGACGGGCACGGTTGCTCTCATGTTGCGACGATGTGCAAGGAGAGGCTTCACGAAATCGTGAAGGAAGAGGTTAATTTTGCGCCGGAGAATCTATCATGGAGAACCACGATGAAGCAAGGCTTCGCTCGCATGGACGATGAGGTTCAGAGATGGACGAGCCAGAGCAACGACACCACCATCACCTGCAGATGCGAGCTTCAAACCCCTCACTGCGACGCCGTCGGCTCCACCGCCGTCGTCGCCGTGGTCACGCCGGAGAAAATCATCGTCTCAAACTGCGGTGACTCCCGCGCTGTTCTCTGCCGTAAAGGCGTCGCCATCCCCCTCTCCGACGACCACAAGGTCCGTTTTCTTTTCCGTTTCATTTTCCCGAGAAACAAACACCACGTTTCTTCTCAATTTTCTTTTCTAACCGTTTTTCGGATCCGTTTCGTGCAGCCTGACCGACCCGATGAATTGATCCGGGTCCAAGCCGCTGGAGGGCGCGTGATCTATTGGGACGGACCGCGCGTGCTTGGGGTTCTAGCCATGTCAAGAGCCATAGGTGACAATTATCTGAAGCCTTACGTGATCTCCGAGCCGGAGGTAACGGTGACGGATCGGACGGACGAGGATGAGTGTTTGATACTAGCGAGTGATGGATTGTGGGATGTGGTGTCAAACGACACCGCATGTGGGGTGGTGAGGATGTGTCTCAAGGCGCAGAAGCAGCTGTCGCCGCCGGGATCACCCTATGAGGACGTGGCGGCCGACGGTTCGGACCGCGCGTGCTCCGATGCGTCCATTCTGTTGACCAAGTTGGCGCTGGCGAGGCATAGTTCGGATAACGTGAGTGTGGTGGTGGTTGATTTGAGGAGAGATCAAAGAAAATCATCCAATTCCAACATCAATGAATGA 1332 0.5518 MAGICCGVVGEGEAAAAATSRPSRRRSLDLLPGFKYLADVALPLPETSRKHTRLDLCAAPRDGEDEFTSGSSKKVKESKGNNDDVVLKPKQSTVSSSSTEGNFEAEECPKFGVTSVCGRRRDMEDSVSVRPSFSERENFHYFGVFDGHGCSHVATMCKERLHEIVKEEVNFAPENLSWRTTMKQGFARMDDEVQRWTSQSNDTTITCRCELQTPHCDAVGSTAVVAVVTPEKIIVSNCGDSRAVLCRKGVAIPLSDDHKVRFLFRFIFPRNKHHVSSQFSFLTVFRIRFVQPDRPDELIRVQAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTDRTDEDECLILASDGLWDVVSNDTACGVVRMCLKAQKQLSPPGSPYEDVAADGSDRACSDASILLTKLALARHSSDNVSVVVVDLRRDQRKSSNSNINE* 444
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0492 443 Gene3D - 105 439 IPR036457 -
Lja6g0492 443 PANTHER ALPHABET, ISOFORM E-RELATED 291 434 - -
Lja6g0492 443 MobiDBLite consensus disorder prediction 62 84 - -
Lja6g0492 443 ProSitePatterns PPM-type phosphatase domain signature. 141 149 IPR000222 GO:0043169
Lja6g0492 443 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 22 259 - -
Lja6g0492 443 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 291 434 - -
Lja6g0492 443 SMART PP2C_4 98 427 IPR001932 -
Lja6g0492 443 ProSiteProfiles PPM-type phosphatase domain profile. 110 429 IPR001932 -
Lja6g0492 443 MobiDBLite consensus disorder prediction 85 101 - -
Lja6g0492 443 MobiDBLite consensus disorder prediction 62 101 - -
Lja6g0492 443 CDD PP2Cc 110 378 IPR001932 -
Lja6g0492 443 PANTHER ALPHABET, ISOFORM E-RELATED 22 259 - -
Lja6g0492 443 SUPERFAMILY PP2C-like 110 429 IPR036457 -
Lja6g0492 443 Pfam Protein phosphatase 2C 111 260 IPR001932 -
Lja6g0492 443 Pfam Protein phosphatase 2C 292 421 IPR001932 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lja6g0492 Lja-Chr6 11758898 11760953 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0492 1 439 PP2C-type Phosphatase Gene Family AT3G11410 55.876 1.86e-139 403
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0492 K14497 - gmx:100776356 537.339
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0492 6 11758898 11760953 Lja6g0492 6 11758898 11760953 ECH
Lja6g0492 6 11758898 11760953 Lja6g0492 6 11758898 11760953 PCT