Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0483 ATGCAAATGCAACCCCCTGCTCTCCCACCCGTGATGGAGTCCACGGCGAAACTCCTCCTTATCACGGCGGCGCTACTCTTGCAGCTGCTAACATGCGCCTCTCCCGCAAAATCCGCAGCCACCCCATGCCCTCCATGCGGCAACACCACCGTACCATTCCCACTCTCCACCGCCGCCACATGCGGCGACCCACTATACAAAATCCGGTGCGCCACCTCCTCAGGAACTCTGATGTTCGACACGGTAAACACCTCCTACCCAATCGAGTCCATCAACCCGAGAACCCAACGCTTCGTGATCCAACCCGCTTCCCTCGTGCCCGGCACGTGCGTCTCCACAGACAAGGTCCACGAAGGTATCCACCTGAACAACACGCTCCCGTTCAACATCACAAGCTCCAACACCATTGTCTACCTCAACTGCACCCTCACGCTGCTCCAGTCGCCGCTCAACTGCTCCTCCGCCAGCGCCTGCCACGCCTACATCAACGCCACCGCTTCCGCCGCCGCGTGTCAATCCGGTCCCCTCTGCTGCACCTACCGCACCGGCGGGTCCAGCAACTCATACCAGATCCGGGTCAGGGACTCGGGTTGCAGAGCCTACTCCAGTTTCGTGAATCTCGACCCGGGTTTACCCGCGAACAGGTGGCCCCGACCCGGGTTGGAAATTCAGTGGGTCTCGCCTAAGGAAACGGTTTGTGGGTCCCAGGTGGATTGTGATGCTGCCACGTCGACTTGTGGGCCAGACTCTTCCTCTGTGAACGGGATCAAGAGGTGTTTCTGTAATAGTGGGCTTGTGTGGGACCCTATTCAAGGGGTGTGCGCCAAAAAAGTTACTTGCCAGAGTCCTGATGGTTGTGATGACTCAACTAACAAAGCAGCTCTAATAGCAGGGTTAACATGCGGGATTGGAGGAGCACTCATCCTTGCCACCATTGCCATCCTGCTCTTCAAACGCCACAAACGCATAAAAGAAGCACAAGAGCGCATAGCTAGAGAGCGTGAAGGAATTCTGAATGCCGGAGGTGGGGGCAGAGCCGCCAAGCTTTTCACTGGCAGAGAGATCAAGAAAGCCACCAATGACTTCTCCGGCGACCGTCTTCTTGGCATTGGCGGCTACGGCGAAGTGTACAAGGGCATTCTCAACGATGGCACCGTCGTGGCTATCAAGTGTGCTAAGCTCGGAAACGCCAAAGGCACTGACCAAATCCTCAATGAGGTTCGTATCTTGAGCCAAGTCAACCACCGCAACCTCGTCGGTCTTCTTGGTTGCTGCGTGGAATTGGAGCAACCCATCATGGTTTATGAGTTCATAGAAAATGGGACACTTCTTGATCACTTGCAGGGTCTAATTCCCAAAGGTCGTGCTTTAATAACGTGGATTCACCGCCTTTCCATTGCTCGTGACACAGCTGAAGGGCTTGCTTACCTTCACTTCATGGCTGTTCCCCCAATATACCACAGAGATGTTAAGTCCAGCAACATTCTGCTAGACATGAAGCACAGTGCCAAGGTTTCAGATTTTGGGTTATCGAGGCTGGCTCAGACTGATATGAGTCATATCTCCACTTGTGCTCAGGGGACCCTCGGGTACCTTGATCCTGAGTATTACAGAAACTACCAATTGACTGATAAGAGTGATGTTTATAGCTTTGGGGTGGTTTTACTTGAGCTTTTGACAGCTCAGAAGGCGATAGATTTTAACAGGGAAGCGGATGATGTAAACTTGGCAATTTATGTGCAGAGAATGGTGGAGCAGGAGAAGTTGATGGAGGTCATTGATCCTGTGTTGAAGGATAGAGCTACTCTTATGGAGTTGGAGACCATGAAGGCATTGGCGTTTCTAGCATTGGGGTGCTTGGAAGAGAAGAGACAAAACCGACCTTCAATGAAAGAGGTAGCAGAGGAGATTGAGTATATCATTAGTATTGCCACGGCGAATGAGGTGGAGAAGTAG 1956 0.5281 MQMQPPALPPVMESTAKLLLITAALLLQLLTCASPAKSAATPCPPCGNTTVPFPLSTAATCGDPLYKIRCATSSGTLMFDTVNTSYPIESINPRTQRFVIQPASLVPGTCVSTDKVHEGIHLNNTLPFNITSSNTIVYLNCTLTLLQSPLNCSSASACHAYINATASAAACQSGPLCCTYRTGGSSNSYQIRVRDSGCRAYSSFVNLDPGLPANRWPRPGLEIQWVSPKETVCGSQVDCDAATSTCGPDSSSVNGIKRCFCNSGLVWDPIQGVCAKKVTCQSPDGCDDSTNKAALIAGLTCGIGGALILATIAILLFKRHKRIKEAQERIAREREGILNAGGGGRAAKLFTGREIKKATNDFSGDRLLGIGGYGEVYKGILNDGTVVAIKCAKLGNAKGTDQILNEVRILSQVNHRNLVGLLGCCVELEQPIMVYEFIENGTLLDHLQGLIPKGRALITWIHRLSIARDTAEGLAYLHFMAVPPIYHRDVKSSNILLDMKHSAKVSDFGLSRLAQTDMSHISTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTAQKAIDFNREADDVNLAIYVQRMVEQEKLMEVIDPVLKDRATLMELETMKALAFLALGCLEEKRQNRPSMKEVAEEIEYIISIATANEVEK* 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0483 651 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 32 646 IPR045274 GO:0007166
Lja6g0483 651 ProSitePatterns Protein kinases ATP-binding region signature. 368 390 IPR017441 GO:0005524
Lja6g0483 651 Gene3D Phosphorylase Kinase; domain 1 327 437 - -
Lja6g0483 651 PANTHER OS05G0318100 PROTEIN 32 646 - -
Lja6g0483 651 CDD STKc_IRAK 368 638 - -
Lja6g0483 651 ProSiteProfiles Protein kinase domain profile. 362 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0483 651 SUPERFAMILY Protein kinase-like (PK-like) 347 637 IPR011009 -
Lja6g0483 651 Pfam Protein kinase domain 365 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0483 651 ProSitePatterns Serine/Threonine protein kinases active-site signature. 485 497 IPR008271 GO:0004672|GO:0006468
Lja6g0483 651 SMART serkin_6 362 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0483 651 Gene3D Transferase(Phosphotransferase) domain 1 438 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0483 Lja-Chr6 11551652 11555927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0483 33 650 Receptor kinase-like Gene Family AT5G02070 53.006 0.0 653
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Lja6g0483 Pkinase 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0483 - - gmx:100305415 1058.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0483 6 11551652 11555927 Lja6g0483 6 11551652 11555927 ECH