Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0481 ATGAGGAGAAGAAACGCGCTGCAAGAAACCCTTCGCCGCCGCGTTGAGGCCTGCAAATCCACACACGCCACCGCCGCCGAAATCGTGAAACATCTCCGCTTTACTTACTCTGCTGATTACCACCGAACCAAGCGCCAAACTCTAACGCGACTTGTTCACGAAGCTCTTCAATCCACTACCACCGCGGCCGCTGCCGCCAACACTCCTACAACACGGAAGCTCGTTCATGACGACGACGGAGTTGATGAGTGTCGAAAGAAGCGGAGGAAAACAGATGAAGGTGAAGTGCGATTGCAAATTGTGGAAGCGAGTGTGCCGCGCGATTCGGAACGTGGTTTGGTCAGGCTGAAGACAAATTTACGGGAGTTATATAAGGGTACAGTTACAAAGAATGTTGAATTGGAGATGGGTAATAGTAGAAAGGCAACTAGTACTGTGAATGAAGGTGAGGTTGAGGTGAAGGGGAAGAGGTTTAGGGATTTTGGTGGGATGAAGAAGGTTTTGGAGAGATTGAAGAGGGAGGTGTTACTGCCACTGTGCCATCCCAAGGAGTGGAGAATGTTAGGACATAAGCCAGAAGTATCGGGGGTTTTGTTGCATGGACCTCCTGGCTGTGGGAAGACTGAACTGGCTCATGCTATTGCTAATGAGACTCGTCTTCCTCTCTATCCCATTTCAGCTACTGCCTTGGTGTCTGCAGGCTCAGGTTCATCTGAAGCGAATATTAGAGACCTTTTCTCTAAAGCATACAAAACTGCTCCCTCAATTATCTTTATTGATGAGATTGACGCAATTGCTTCAAAAAGAGAGAATTCACAGCATGGGATGGAGAATCGAATGGTTTCACAGTTACTTACTTGCATGAATCAATCAGTTCTTGATTCGGAGAGTAGTAGCTCTGTTCTTGTAATTGGAGCTACAAATAGGCCAGATGCTGTTGACCCTGCCCTTAGAAGGCCTGGTAGATTTGATTGTGAGATTAATATAGGCATTCCTGATGAATCTGCTAGGGAGGACATACTTTCCGTGCTAACTCGCGGTCTTTTAATCGAGGGTCCGATTGATCTAAAAAAGTTAGCTAGGTCTACGCCAGGATTTGCTGGCGCAGATTTGGTGTGTCTAGTTAAAATAGCGGGCAAGTTGGCGATGTTAAGAATAGTTGATGAAAGGTATGTCATGAGGGAGTTTCTTGAAGATTGGTTGATGGAGTCTTGGTCACGTGAAGAAAGGGATAAGCTTGCCCTCAAAATGTCTGATTTCGAGGAAGCTATCAAAGTTGTACAACCGTCAACAAGAAGAGAAGGGTTCTCTTCCATTCCAAATGTAAAGTGGGAAGATGTTGGTGGGCTTGATTCGTTAAGAGATGAGTTTGAAGACTTTATTATAGGCCGTATTAAAGATCCTGAACTTTACGAGTGCTTTGGGTCCGATCATCTTGAGACTGGATTTTTGCTTTATGGACCTCCAGGTTGTGGTAAAACACTGATTGCCAAAGCTGTTGCCAATGCAGCAGGAGCTAATTTCATTTATATTCAGGGACCTGAACTACTAAATAAATATGTTGGAGAAAGTGAGCTTGCAGTTCGGACATTGTTTAGTCGTGCAAGGACATGTGCACCTTGTATACTTTTTCTCGATGAGGTGGATGCTTTGACAACCAGACGTAGTTTAGAAGGTGGACGGGTTACTGAAGGACTAGTGAACCAGTTGCTGACCGAGTTAGATGGAAAAGAGCAGCGGAAGGATGTTTATGTGATTGGTACAACAAATAGGCCTGAGGCGGTGGATCGCGCTATTTTACAGCCTGGTAGGCTTGGAAAACATCTTTATGTTCCTCACCCAAGTCCAGAAGATCGGGTTAAGATATTGAAAGCTCTTGCAAGAGATACGCGCCTTGATGCCGGTGTGGATTTGAATGTCATAGGAAGAATGGAAGCTTGTGAAAACATGAGTGGTGCTGAACTTAGGGCACTGATGGGCGAAGTGGAAAGGGATGCTCGTAGAGAGGTAAGGGCCGGAACTAATACAACCCGTACCATCAAGACACATCATTTTGATGCAGCGTTCAGTAAAATCTCTGCCTCTAAGTCAGACAAGCAAAGGTTTTTTTTCACTACCGGTAATGGTCAAAGAGGTTAA 2139 0.4535 MRRRNALQETLRRRVEACKSTHATAAEIVKHLRFTYSADYHRTKRQTLTRLVHEALQSTTTAAAAANTPTTRKLVHDDDGVDECRKKRRKTDEGEVRLQIVEASVPRDSERGLVRLKTNLRELYKGTVTKNVELEMGNSRKATSTVNEGEVEVKGKRFRDFGGMKKVLERLKREVLLPLCHPKEWRMLGHKPEVSGVLLHGPPGCGKTELAHAIANETRLPLYPISATALVSAGSGSSEANIRDLFSKAYKTAPSIIFIDEIDAIASKRENSQHGMENRMVSQLLTCMNQSVLDSESSSSVLVIGATNRPDAVDPALRRPGRFDCEINIGIPDESAREDILSVLTRGLLIEGPIDLKKLARSTPGFAGADLVCLVKIAGKLAMLRIVDERYVMREFLEDWLMESWSREERDKLALKMSDFEEAIKVVQPSTRREGFSSIPNVKWEDVGGLDSLRDEFEDFIIGRIKDPELYECFGSDHLETGFLLYGPPGCGKTLIAKAVANAAGANFIYIQGPELLNKYVGESELAVRTLFSRARTCAPCILFLDEVDALTTRRSLEGGRVTEGLVNQLLTELDGKEQRKDVYVIGTTNRPEAVDRAILQPGRLGKHLYVPHPSPEDRVKILKALARDTRLDAGVDLNVIGRMEACENMSGAELRALMGEVERDARREVRAGTNTTRTIKTHHFDAAFSKISASKSDKQRFFFTTGNGQRG* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0481 712 CDD AAA 482 612 - -
Lja6g0481 712 CDD AAA 192 330 - -
Lja6g0481 712 Pfam AAA+ lid domain 354 397 IPR041569 -
Lja6g0481 712 PANTHER AAA-FAMILY ATPASE 27 699 - -
Lja6g0481 712 Gene3D - 332 434 - -
Lja6g0481 712 Gene3D - 440 700 IPR027417 -
Lja6g0481 712 PANTHER NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE 27 699 - -
Lja6g0481 712 Gene3D - 142 331 IPR027417 -
Lja6g0481 712 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 434 IPR027417 -
Lja6g0481 712 Gene3D - 614 690 - -
Lja6g0481 712 SMART AAA_5 193 333 IPR003593 -
Lja6g0481 712 SMART AAA_5 479 615 IPR003593 -
Lja6g0481 712 ProSitePatterns AAA-protein family signature. 301 319 IPR003960 GO:0005524|GO:0016887
Lja6g0481 712 Pfam ATPase family associated with various cellular activities (AAA) 197 330 IPR003959 GO:0005524|GO:0016887
Lja6g0481 712 Pfam ATPase family associated with various cellular activities (AAA) 484 612 IPR003959 GO:0005524|GO:0016887
Lja6g0481 712 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 440 697 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0481 Lja-Chr6 11523138 11527841 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0481 413 692 Calmodulin-binding Proteins AT3G56690 38.652 1.22e-51 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0481 K14571 - gmx:100809594 788.104