Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0475 ATGGTTTGGCGAGTTCCAATTAGATCTTCGGGTAACCGTGCTAGATCTCAGAAGGAGGAAGAGGATCTGGACCGTGCAATAGCACTTTCTTTAGGTGAAGGTTTAAAGAAACCATCTGGATATAGATGGCGGACAAGTACTGATGAAGATCACACAAAGGCACTTCAGGATCGAATGCACTCATCTGCATACCCTCCGTATGCCCCTTTACCTTTTTATCCTCGTGGATACAGCATGCCATCACATATCAGAATATGTGGAGGGTGCAACAAGGAAATACTCCATGGAAACTGTTTGGGAGTTGAGAATCGTTATTTTCATTCAGATTGCTTCAAGTGTCACTCTTGTCATCACCCCATTAAAGAGCGTGAGTTCTCTTTGTCAGGGAAGCATCCATATCACAAGTCCTGTTTTATAAATTTGACACACCCTAAATGTGAAGTTTGCCATCAACATATACCTATAAATGCTGCTGGTTTGATTGAGTATAGGTGCCACCCCTATTGGAACCAAAAGTATTGTCCGTCTCATGAATATGATAATACATCTCGATGCTCTAGTTGTGAAAGATTAGAGTCTCGGGGTGAAAGATACATTAGATTGGAAGATGGACGAGTTTTGTGCCTCGAGTGCATAGAATCTGCTATAACGGATACTGGAGAATGTCAACCTCTTTATCATGCTATCAGAGACTATTATGAAGGATTGAACATGAAAATTGATCAACAAGTACCCATGTTACTCGTTGGAAGAGAAGCACTCAATGATGCTATTGTTGGGGAGAAAAATGGTTTCCATCACTTGCCAGAAACAAGGGGCTTATGCCTTTCAGAAGAACAGACTGTGACCAGTGTGTATAGATGGCCAAAATTTGGAGGCCATCGATTAGTAGGAATGAGAACTCAACCTCAGAAACTGACTAGGAAATGTGAAGTTACAGCTATTCTTGTCCTCTATGGTCTTCCAAGGTTACTCACAGGTGCCATCCTTGCCCACGAGTTGATGCATGCTTGGTTGCGCCTTAAAGGTTACCGCAACCTTACCCCTGAAGTAGAGGAAGGTATTTGCCAGGTTCTTTCTTACTTGTGGCTTGATGCAGAAGTGATGCCAGGCTCAAGAACTATGCCATCAACATCAATAGCATCTTCATCATCCTCCTCCTCCTCCTCATACTCATCAAAGAAAGGTGTGAGATCTAAAGTTGAAAATAAATTGGGAGAATTTTTCATGCACCAGATTGCCAATGATTCTTCCCCAGCTTATGGTGGAGGCTTTAGAGCAGCTAATGCAGCTGTTAATAAATATGGTTTACGTGCTACTCTGGATCATATTCGTTTAACTGGCCAGTTCCCACTGTAA 1359 0.4231 MVWRVPIRSSGNRARSQKEEEDLDRAIALSLGEGLKKPSGYRWRTSTDEDHTKALQDRMHSSAYPPYAPLPFYPRGYSMPSHIRICGGCNKEILHGNCLGVENRYFHSDCFKCHSCHHPIKEREFSLSGKHPYHKSCFINLTHPKCEVCHQHIPINAAGLIEYRCHPYWNQKYCPSHEYDNTSRCSSCERLESRGERYIRLEDGRVLCLECIESAITDTGECQPLYHAIRDYYEGLNMKIDQQVPMLLVGREALNDAIVGEKNGFHHLPETRGLCLSEEQTVTSVYRWPKFGGHRLVGMRTQPQKLTRKCEVTAILVLYGLPRLLTGAILAHELMHAWLRLKGYRNLTPEVEEGICQVLSYLWLDAEVMPGSRTMPSTSIASSSSSSSSSYSSKKGVRSKVENKLGEFFMHQIANDSSPAYGGGFRAANAAVNKYGLRATLDHIRLTGQFPL* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0475 452 Pfam LIM domain 86 140 IPR001781 -
Lja6g0475 452 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 80 111 - -
Lja6g0475 452 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 452 - -
Lja6g0475 452 MobiDBLite consensus disorder prediction 1 21 - -
Lja6g0475 452 MobiDBLite consensus disorder prediction 375 395 - -
Lja6g0475 452 ProSiteProfiles LIM domain profile. 84 144 IPR001781 -
Lja6g0475 452 CDD LIM_DA1 86 138 - -
Lja6g0475 452 Pfam Protein DA1 235 447 IPR022087 -
Lja6g0475 452 Gene3D Cysteine Rich Protein 82 143 - -
Lja6g0475 452 SMART lim_4 85 137 IPR001781 -
Lja6g0475 452 ProSitePatterns LIM zinc-binding domain signature. 86 120 IPR001781 -
Lja6g0475 452 PANTHER PROTEIN DA1-RELATED 2 1 452 IPR045218 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0475 Lja-Chr6 11418952 11424196 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja6g0475 DA1-like 3.6e-99 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0475 - - lja:Lj0g3v0329179.1 786.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0475 6 11418952 11424196 Lja6g0475 6 11418952 11424196 ECH
Lja6g0475 6 11418952 11424196 Lja6g0475 6 11418952 11424196 PCT