Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0464 ATGGCATCCAACAAGCAAGATAAGCACTCTCCAATCCAATTCTTTATGATCATCACCACAACAAGTATTGAAGGTGGAAATCTTAAACTTCCAAATGCTTTCACTAGGAAATACAGTGGTGATATGTCAAATCCAGTATTTCTCAAGCCTCTGGATAATATCAGTTGGGAGATAAACTGGAGTAAACAAGATTCAGATATTTGGTTACAAAATGTTTGGGAGGAATTTGTGAAACATTACTCACTTGATCAAGGGCACATGGTTTGGCACTTGGTTTTATTTGAATTCAAGGGACCTTCTAAGTTTGAGGTGCGTATATTTGACAAGAACGCCCTTGAAATAAAATACCTTCCACTTAGTAACAAGCAAATTCCGAACTCAGCAACCCGTTTCTTTAGGATCATCACACTACCATGTCTTGAAGCTGGAGAGCTTATTCTTCCAAATGGTTTCATGAAGAAATACAGTGGTGGCATGTCAAACCCAGTATTTCTCAAGGCCCCAGATAACACTAGTTGGGAGATACACTGGAGCAAACATGATTCATATTTTTGGTTCCAAAAGGGTTGGAAAGAGTTTGTGAAATATTACTCCCTTGATCATGAGCACTTGGTATTGTTTGAATTCAAGGATGCTTCTCATTTTAGGGTACACATATTTGATAAGAGTACCCTTGAAATAGAATATCCTTCAAATGAGAATCAAGGTGAAGAGCACAACCCTGATCAGATTGGTGATGAGATACCGCCGCCCAAGAAGACTAAACCAAAATCACCAATGTCACTTTCTCAACCACGCAAGAAATTGAGAACCGGTAAAAGCAAAGATGTTGGAAAAAGCCCTGAATTGAGAAAGCGGAAAAAAGTCCAAGTTGAAGATGATGTAGGAGGAAGCACTGAACGTGCCACCTTCGTGGTTGAGCTGCAACCTTACAGTATTGATAGATATTCCTTGCGTATCCCATTACACTTTGCTAGAACACATTTAAAGATGAAAAAAGGGGATATCCGCCTTGAGAGGTTGGATGGGAGAACTTGGAAGGTTTATTATAGTTTCTTCAAGTTAGGTGGTGGGTGGAAGAAATTTGCTACAGATAACAATTTGAAAGTGGGGGATATTTGTGTTTTTGAGCTGACCAAAAGGGAACCCCTTTCATTGAAAGTATTGATCTTTCCAGTTGCACAAGGTGGGGTGCCAAGTAGCCTGGGCCCACACTTCACAAATGCTGCTCAGAGGGAAGCTAGGAAATACACCCCAAAGAATCCCTCTTTCACTGTCAGTTTAAATCCGGTCATTAAACCTGCGTACAGACCGCCTGTACCCATTTCCTTCATCAGAGAGTACTTGAATGAGAAGAAGCAAATCATAAATTTAAAGATTGAAGAAAAATTGTGGCCTGTGGAGTTTATATATTATCCAGAATTTGGTTTAGGAAAGTTGTCTAAAGGTTGGATAATATTTGCAAAAGAAAGTAAACTTGTAGGTGGAGATGTTTGTGTGTTTGAGCTCATCAACAAGGACGAGGAAAATCCAGTGCTTGAAGTTCATATCTTCAAAGGTCACTGA 1566 0.3959 MASNKQDKHSPIQFFMIITTTSIEGGNLKLPNAFTRKYSGDMSNPVFLKPLDNISWEINWSKQDSDIWLQNVWEEFVKHYSLDQGHMVWHLVLFEFKGPSKFEVRIFDKNALEIKYLPLSNKQIPNSATRFFRIITLPCLEAGELILPNGFMKKYSGGMSNPVFLKAPDNTSWEIHWSKHDSYFWFQKGWKEFVKYYSLDHEHLVLFEFKDASHFRVHIFDKSTLEIEYPSNENQGEEHNPDQIGDEIPPPKKTKPKSPMSLSQPRKKLRTGKSKDVGKSPELRKRKKVQVEDDVGGSTERATFVVELQPYSIDRYSLRIPLHFARTHLKMKKGDIRLERLDGRTWKVYYSFFKLGGGWKKFATDNNLKVGDICVFELTKREPLSLKVLIFPVAQGGVPSSLGPHFTNAAQREARKYTPKNPSFTVSLNPVIKPAYRPPVPISFIREYLNEKKQIINLKIEEKLWPVEFIYYPEFGLGKLSKGWIIFAKESKLVGGDVCVFELINKDEENPVLEVHIFKGH* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0464 521 Gene3D - 284 395 IPR015300 -
Lja6g0464 521 Gene3D - 406 520 IPR015300 -
Lja6g0464 521 Gene3D - 123 224 IPR015300 -
Lja6g0464 521 Gene3D - 5 111 IPR015300 -
Lja6g0464 521 SUPERFAMILY DNA-binding pseudobarrel domain 417 519 IPR015300 -
Lja6g0464 521 ProSiteProfiles B3 DNA-binding domain profile. 423 521 IPR003340 GO:0003677
Lja6g0464 521 MobiDBLite consensus disorder prediction 232 294 - -
Lja6g0464 521 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 408 519 - -
Lja6g0464 521 SMART B3_2 424 521 IPR003340 GO:0003677
Lja6g0464 521 SMART B3_2 15 110 IPR003340 GO:0003677
Lja6g0464 521 SMART B3_2 131 223 IPR003340 GO:0003677
Lja6g0464 521 SMART B3_2 304 394 IPR003340 GO:0003677
Lja6g0464 521 PANTHER B3 DOMAIN-CONTAINING 124 391 - -
Lja6g0464 521 CDD B3_DNA 14 108 IPR003340 GO:0003677
Lja6g0464 521 SUPERFAMILY DNA-binding pseudobarrel domain 9 110 IPR015300 -
Lja6g0464 521 MobiDBLite consensus disorder prediction 269 294 - -
Lja6g0464 521 ProSiteProfiles B3 DNA-binding domain profile. 130 223 IPR003340 GO:0003677
Lja6g0464 521 ProSiteProfiles B3 DNA-binding domain profile. 13 110 IPR003340 GO:0003677
Lja6g0464 521 CDD B3_DNA 422 519 IPR003340 GO:0003677
Lja6g0464 521 ProSiteProfiles B3 DNA-binding domain profile. 303 394 IPR003340 GO:0003677
Lja6g0464 521 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 124 391 - -
Lja6g0464 521 MobiDBLite consensus disorder prediction 232 253 - -
Lja6g0464 521 SUPERFAMILY DNA-binding pseudobarrel domain 129 223 IPR015300 -
Lja6g0464 521 PANTHER B3 DOMAIN-CONTAINING 5 117 - -
Lja6g0464 521 PANTHER B3 DOMAIN-CONTAINING 408 519 - -
Lja6g0464 521 CDD B3_DNA 145 221 IPR003340 GO:0003677
Lja6g0464 521 SUPERFAMILY DNA-binding pseudobarrel domain 300 391 IPR015300 -
Lja6g0464 521 CDD B3_DNA 304 392 IPR003340 GO:0003677
Lja6g0464 521 Pfam B3 DNA binding domain 305 392 IPR003340 GO:0003677
Lja6g0464 521 Pfam B3 DNA binding domain 19 109 IPR003340 GO:0003677
Lja6g0464 521 Pfam B3 DNA binding domain 136 222 IPR003340 GO:0003677
Lja6g0464 521 Pfam B3 DNA binding domain 440 515 IPR003340 GO:0003677
Lja6g0464 521 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 5 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0464 Lja-Chr6 11093042 11096369 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0464 410 519 B3 DNA Binding Superfamily AT3G18990 37.168 4.01e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja6g0464 B3 4.7e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0464 - - lja:Lj0g3v0340729.1 892.493