Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0444 ATGGATGTGATAAAGACTCAGCAAGTATCATCTCGACCGATCGAGAAGGTGGTGGTTCACCCGCTAGTGCTTCTGAGCATCGTCGACAACTACAACAGAGTCGCCAAGGACACACGGAAGCGCGTCGTCGGCGTCTTGCTCGGTTCCACTTTCAAAGGCACCGTCGACGTTTCCAACAGCTACGCCGTTCCCTTTGAAGAAGATGACAAGGATCCAAGCATCTGGTTTCTTGACCATAATTACCATGAATCAATGTTCTCCATGTTTAAGAGAATAAATGCTAAGGAGCATGTCGTCGGGTGGTATAGCACTGGTCCAAAACTGCGTGAAAACGACCTTGACATTCATGGACTATTCAATGACTATGTACCAAATCCTGTTTTGGTTATAATTGATGTTGAACCTAAGGAGTTGGGAATTCCAACAAAAGCATACTATGCTGTGGAAGAGGTTAAAGAGAATGCTACCCAGAAAAGCCAAAAGGTCTTTGTGCATGTGCAATCAGAAATTGCTGCTCATGAAGTTGAGGAGATAGGAGTGGAGCACTTGCTTAGGGATGTGAAGGATACAACCATTAGCACCCTTGCAACAGAGGTAAGTGCAAAACTTACAGCCTTGAAGGGTTTGGATGCAAGACTTAAAGAAATAAGGGGTTACCTTGACCTTGTTATTGATGGAAAGCTTCCACTAAACCATGAGATCTTGTACCACTTGCAGGATGTGTTCAACCTGCTACCAAATCTCAATGTTGCTGATCTTATCAAGGCTTTTGCAGTGAAAACCAATGATATGATGTTGGTAATATACCTATCGTCTCTCATTAGAAGTGTGATTGCACTTCACAACTTGATTAACAACAAGATGCTCAACAAAGAACATGAAAGGGAAGAAGACTCGAAAACGGTACCAGTGCCAAGTGCAGCTGCGTAA 930 0.4355 MDVIKTQQVSSRPIEKVVVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSTFKGTVDVSNSYAVPFEEDDKDPSIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLRENDLDIHGLFNDYVPNPVLVIIDVEPKELGIPTKAYYAVEEVKENATQKSQKVFVHVQSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVSAKLTALKGLDARLKEIRGYLDLVIDGKLPLNHEILYHLQDVFNLLPNLNVADLIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHEREEDSKTVPVPSAAA* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0444 309 CDD MPN_RPN7_8 15 295 IPR033858 GO:0005838
Lja6g0444 309 PANTHER 26S PROTEASOME REGULATORY PARTICLE NON-ATPASE SUBUNIT 8 1 309 - -
Lja6g0444 309 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 1 309 - -
Lja6g0444 309 Pfam Maintenance of mitochondrial structure and function 174 285 IPR024969 -
Lja6g0444 309 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 15 124 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lja6g0444 309 ProSiteProfiles MPN domain profile. 17 154 IPR037518 -
Lja6g0444 309 SMART pad1_6 16 150 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lja6g0444 309 Gene3D Cytidine Deaminase, domain 2 9 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0444 Lja-Chr6 10770854 10775200 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0444 19 248 Eukaryotic Initiation Factors Gene Family AT2G39990 29.060 8.67e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0444 K03038 - gmx:100790393 595.89