Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0443 ATGGACGAGAATAACATGTCAGGGTTTTGTATTAGAGGTGGTAGTGGTGGCAATAGTGGTACCAAGTGTGGGCGTTGGAATCCCACTACGGAACAGGTTAAGGTTCTGACTGAACTGTTCAGTTCTGGGCTTCGTACACCCAGCACTGATCAGATTCAGAAGATCTCTACTCAGTTGAGTTTTTATGGGAAGATAGAGAGCAAGAATGTGTTCTATTGGTTTCAGAATCACAAGGCCAGGGAGAGACAGAAGCGGCGCAAGGTCACCTTTGATGACAAGGATTTCAATGTGATTCTTAGAGAAAATTCCATGTCCAAGAATTCTTCTAAACAAAATTATGCACAGTTCTATCAGGTTACAGAGCCAGAGAGGGTGATTGAGACTCTTCAACTCTTCCCTTTGAACTCCTTTGGTGAATCAGAATCAAAGAATTTGAGGGTCCATGCAAATGAATGCAGGGACAGTGCAATGTTTTCATACTTGATGGGTGAACAAATGGATCATCCACCATTAGATCTTCGCTTGAGTTCTCTGTAA 537 0.4264 MDENNMSGFCIRGGSGGNSGTKCGRWNPTTEQVKVLTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKVTFDDKDFNVILRENSMSKNSSKQNYAQFYQVTEPERVIETLQLFPLNSFGESESKNLRVHANECRDSAMFSYLMGEQMDHPPLDLRLSSL* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0443 178 ProSiteProfiles 'Homeobox' domain profile. 19 84 IPR001356 GO:0003677
Lja6g0443 178 Pfam Homeodomain 23 83 IPR001356 GO:0003677
Lja6g0443 178 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 1 167 IPR044555 GO:0003700|GO:0099402
Lja6g0443 178 SMART HOX_1 21 88 IPR001356 GO:0003677
Lja6g0443 178 CDD homeodomain 25 85 IPR001356 GO:0003677
Lja6g0443 178 Gene3D - 22 90 - -
Lja6g0443 178 PANTHER WUSCHEL-RELATED HOMEOBOX 7 1 167 - -
Lja6g0443 178 SUPERFAMILY Homeodomain-like 24 87 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0443 Lja-Chr6 10767220 10768397 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0443 5 178 Wox Gene Family AT3G11260 51.309 1.05e-58 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Lja6g0443 Homeodomain 2.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0443 - - gmx:100791433 271.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0443 6 10767220 10768397 Lja6g0443 6 10767220 10768397 ECH
Lja6g0443 6 10767220 10768397 Lja6g0443 6 10767220 10768397 PCT