Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0429 ATGGAAAATGGTCGTTTCCCTTGTCCTCTTCAACATGATTTTCCTGCTGGTCTGCGAGTCCTCCTTGTCGATCATGATCCAACATGTTTGCAGATTCTTGAAAGGAAGCTCAAGAAGTGCGACTATGAAGTGACTGCTTGTTGTTTAGCAAGACATGCTCTGAACTTGCTTCGTGAAAGGAAGGATGGATACGATATAGTGATCAGTGATGAAAACATATCTGACATGGATTGGTTGAAACTCCTTGAGCATGTTAGACTCGAGATGGATCTTCCTTTCATTATGATGTCTAAGGATGGAGAAACAAGCAAAGTGATGAAAAGCGTCCAACTTGGAGCGTGTGCTTATCTCCACAAGCCTGTACGAATCAAAGAACTAAAAATTATATGGCAACATGTATTAAGAAAAAGGATAGATGAGGCTAGAGAATTTGAAAGTTTTGAGAGCATTCACTTGATGAAAAATGGATCAGAACAGTCTGATTATGGAGACCTGATTGCTGGAGAAGGTATGACCTCAACCAAGAAAAGAAAAGTTGCAGATAACAGAGAATTTTCCGATCCATCTACCACAAAGAAAGCTAGATTCGTTTGGTCTGACGATCTTCATTACAAGTTTGTTAAAGCGGTGAATCAGATTGGACTAGATAAAGCTGGTCCCAAGAAAATACTAGATTTGATGAATGTTCCATGGCTGACTAGAGAGAAGATTGCTAGCCACTTGCAGAAATACCGGCTTTACTTGAGTAGGCTTCAGAAAGACGGCGGACAAAAATCTTCCTCAAAAGGTAACCTTACATCGTTTGATTGTGCCATCCCAACACAGTACTCTTGGACTGAAGTTCCAGGAATGCAACTCAGAGAAGAACAGAAGTCAATTGTTCAGTTAGAGGATAGCTTCAACCAGTTGCCGCCATTACTTGGAAAGCAGCACCATATCCAAGTTGATCAATCACAATCAATTGCTTCAATTAGTTCCACTCCCGCAATAACTGAGGCAGGGATTCCTGCTTGTATAGAAACAAAATCTTTGTTTTCTGATTACCAGAGCAGTCACACCAGTTCTGTGAGTTCCGAAGTGAGTGCACTTGACACCTTTCCGATTCAACCTGGAAGCCTTATGATGAGTGATCAACCTTTACAACCAACACCCGCTGCAAATTTAGGCTTGAAAACACAGGGATCTAATCTCAGTTCCATTTCTGATTTAGAGTTTTACCAAAGAAACCTACTTTTGGGAGGTGATACTCCTGCTTCTTTGGATGAGGACTTATATTCTTACTGGATACAAGGTGGATGCTATAATATGAACTTCGGTCTGCAGAGTACAGCTATGACTGAGTTTTATGATCCAGGGTTTATTACAGAAGTTCTGCCCCTCTTATATGATTCAACTGATTATTCAGGTATAGATCAAATCTATTCATAG 1428 0.4048 MENGRFPCPLQHDFPAGLRVLLVDHDPTCLQILERKLKKCDYEVTACCLARHALNLLRERKDGYDIVISDENISDMDWLKLLEHVRLEMDLPFIMMSKDGETSKVMKSVQLGACAYLHKPVRIKELKIIWQHVLRKRIDEAREFESFESIHLMKNGSEQSDYGDLIAGEGMTSTKKRKVADNREFSDPSTTKKARFVWSDDLHYKFVKAVNQIGLDKAGPKKILDLMNVPWLTREKIASHLQKYRLYLSRLQKDGGQKSSSKGNLTSFDCAIPTQYSWTEVPGMQLREEQKSIVQLEDSFNQLPPLLGKQHHIQVDQSQSIASISSTPAITEAGIPACIETKSLFSDYQSSHTSSVSSEVSALDTFPIQPGSLMMSDQPLQPTPAANLGLKTQGSNLSSISDLEFYQRNLLLGGDTPASLDEDLYSYWIQGGCYNMNFGLQSTAMTEFYDPGFITEVLPLLYDSTDYSGIDQIYS* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0429 475 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 256 IPR045279 GO:0009736
Lja6g0429 475 PANTHER TWO-COMPONENT RESPONSE REGULATOR 260 452 IPR045279 GO:0009736
Lja6g0429 475 CDD REC_typeB_ARR-like 20 134 - -
Lja6g0429 475 Pfam Response regulator receiver domain 20 127 IPR001789 GO:0000160
Lja6g0429 475 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Lja6g0429 475 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 193 246 IPR006447 GO:0003677
Lja6g0429 475 Gene3D - 189 252 - -
Lja6g0429 475 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 256 - -
Lja6g0429 475 PANTHER TWO-COMPONENT RESPONSE REGULATOR 260 452 - -
Lja6g0429 475 SMART REC_2 18 130 IPR001789 GO:0000160
Lja6g0429 475 Pfam Myb-like DNA-binding domain 198 245 IPR001005 -
Lja6g0429 475 SUPERFAMILY CheY-like 17 141 IPR011006 -
Lja6g0429 475 SUPERFAMILY Homeodomain-like 190 250 IPR009057 -
Lja6g0429 475 Gene3D - 18 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0429 Lja-Chr6 10404163 10407513 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0429 14 259 Response Regulator Gene Family AT2G25180 48.659 1.18e-69 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lja6g0429 Response_reg 1.1e-15 CL0304