Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0427 ATGGAGGACCTGAACCAAAACGTTACCGTCGTGGCTCATTCCCAAAAGTCCACTCAGAAAGGACCAAAAACCAGCGAGGAGCAAACGACGGCTCTACCGTGGCTCACAACCACCGGCGACAACAATGTTGCACCCGTAGGTGCCGGAGTGGAGGCTTCACCGGAACCCATCGCCGAAGAAGCATCTGTGGTGGCAGGATCGGGACAGGTGGTGAAGAGGGGAAGGCCTCGGAAGCACGACGTTGGCAGGAGCCAACTGTCTCAGGCGATTACGCCGCCGCTGGGGTTTGCTGTTCAACCTTCTGGAGGAAATGGTGTTAAGAGAGGAAGGGGACGCCCTCATGGCTCTGGGAGGCTGCAAATTCTGGCCTCCACTGGGGGGCTTGTTGCAGAAATAGCTGGGGGAGGTTTCACACCTCGTGTGGCGACTGTGAATATTGGGGAGGACATGGTCAGCAAGATAACATCATGTTATCAGAGAGGCCCTATGTCAGTTTGTTTCGTTTCTGCTGTTGGTCTTGTATCAAGTGTCACCATTCGTAAACCTGGTTCTACTAACCTATCAACTTATGAGGGCTCTTTTGAAATTTTGTCCTTAACTGGATCATACGCCTTTTCTACTGGAGCTGAGGGTGCACATACAAAAAGTTTGTTGCTGAGTGTTTTATTGGCTAAACCTAATGGACAGGTTTTTGGTGGGAACATTGAGAACTCCTTGATAGCTGCAGGCCCCATCCAGCTTATACTGGCCACATTCAAGCAAAAGATCACAAACCAAGCTAAGAAAAGACGATCATCTGATTCAACCAATGCTCTCAGCATATCGGGTAATCCAGATTCAGAAAAGGAGGATCTCCATAAAGCCCCTAGGTTAACAGAAGGAGAGATGATTTGCAAGAACCTGAATTAA 909 0.495 MEDLNQNVTVVAHSQKSTQKGPKTSEEQTTALPWLTTTGDNNVAPVGAGVEASPEPIAEEASVVAGSGQVVKRGRPRKHDVGRSQLSQAITPPLGFAVQPSGGNGVKRGRGRPHGSGRLQILASTGGLVAEIAGGGFTPRVATVNIGEDMVSKITSCYQRGPMSVCFVSAVGLVSSVTIRKPGSTNLSTYEGSFEILSLTGSYAFSTGAEGAHTKSLLLSVLLAKPNGQVFGGNIENSLIAAGPIQLILATFKQKITNQAKKRRSSDSTNALSISGNPDSEKEDLHKAPRLTEGEMICKNLN* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0427 302 MobiDBLite consensus disorder prediction 259 291 - -
Lja6g0427 302 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 8 298 IPR039605 GO:0003680
Lja6g0427 302 SUPERFAMILY AF0104/ALDC/Ptd012-like 136 258 - -
Lja6g0427 302 PANTHER DUF296 DOMAIN PROTEIN 8 298 - -
Lja6g0427 302 ProSiteProfiles PPC domain profile profile. 134 275 IPR005175 -
Lja6g0427 302 MobiDBLite consensus disorder prediction 1 28 - -
Lja6g0427 302 MobiDBLite consensus disorder prediction 93 114 - -
Lja6g0427 302 MobiDBLite consensus disorder prediction 263 277 - -
Lja6g0427 302 CDD DUF296 138 252 IPR005175 -
Lja6g0427 302 Pfam Plants and Prokaryotes Conserved (PCC) domain 140 253 IPR005175 -
Lja6g0427 302 Gene3D - 140 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0427 Lja-Chr6 10362681 10367408 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0427 72 252 AT-hook Motif Nuclear Localized (AHL) Family AT2G45850 42.328 4.39e-33 121