Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0426 ATGGCCACCGCCACCGCCGCCGCCACGTCACACTTCTTCGGCACCCGTCTCGGCAACACCACCTCAGACGCCGGAAAATTCCACGCCCTCTTCAAATTCGGCACCAAGAAAGCACCACCTGCTCCCAAGAAAAAACAGGTGAGAGTGACACCCGAAGAGGACCGTCTCGTGTGGTTCCCGGGCGCACAGCGACCCGAATGGCTCGACGGATCCTACATCGGAGACCGTGGGTTCGACCCGCTTGGGTTCGCCAGACCCGCGGAGTATCTGCAGTTCGACTATGACGGACTGGACCAGAACCTGGCGAAGAATCTCGCCGGCGACATCATCGGAACCAGGGTTGAGACCAATGAAGTCCAACCGACGCCGTTTCAGCCGTACGCGGAGGTTTTCGGGATTCAGAGGTTCCGTGAATGCGAGGTCATTCATGGAAGGTGGGCCATGCTTGGTGCTCTTGGTGCTTTGTCTGTTGAAGCTCTCACTGGGGTTGCATGGCAAGATGCTGGAAAGGTAGAGCTGGTGGATGGGTCATCCTACCTGGGACTTCCACTTCCATTCTCAATCACCACATTGATCTGGATCGAGGTGTTAGTGATTGGCTACATTGAGTTCCAGAGAAATGCAGAGCTTGACCCTGAGAAAAGGCTATACCCAGGAGGCAAGTTCTTCGATCCTCTGGGGTTGGCGAACGACCCTGAGGAGAAGGAAAGACTTCAACTGGCAGAGATCAAGCATTCTCGCTTAGCTATGGTGGTGTTCCTGATCTTTGCAATTCAAGCTGCTGTAACAGGCAAAGGCCCTATCAGTTTTCTTGCAACCTTCAACAAGTGA 831 0.5463 MATATAAATSHFFGTRLGNTTSDAGKFHALFKFGTKKAPPAPKKKQVRVTPEEDRLVWFPGAQRPEWLDGSYIGDRGFDPLGFARPAEYLQFDYDGLDQNLAKNLAGDIIGTRVETNEVQPTPFQPYAEVFGIQRFRECEVIHGRWAMLGALGALSVEALTGVAWQDAGKVELVDGSSYLGLPLPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLANDPEEKERLQLAEIKHSRLAMVVFLIFAIQAAVTGKGPISFLATFNK* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0426 276 Pfam Chlorophyll A-B binding protein 65 260 IPR022796 -
Lja6g0426 276 PANTHER CHLOROPHYLL A-B BINDING PROTEIN CP29.3, CHLOROPLASTIC 1 276 - -
Lja6g0426 276 SUPERFAMILY Chlorophyll a-b binding protein 49 273 - -
Lja6g0426 276 Gene3D Chlorophyll a/b binding protein domain 57 276 - -
Lja6g0426 276 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 276 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0426 Lja-Chr6 10353867 10356260 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0426 13 273 Chloroplast and Mitochondria Gene Families AT3G08940 70.992 1.35e-133 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0426 K08915 - gmx:100820335 464.922