Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0418 TCTCTTTTGGCAAACGAGGATTTCCAGCACATTCTACGTGTGTTGAATACCAACGTTGATGGGAAGCAGAAGATTATGTTTGCTCTGACCTCCATCAAGAGTATTGGAAGGAGATTCGCCAACATCTGTTGCAAGAAGGCTGATGTTGACATGAACAAGAGAGCTGGTGAGTTGGGTGTTGCTGAGTTGGACAATGTGATGACTGTTGTTGCCAACCCTAAGCAATTCAAGATCCCAGATTGGTTCCTCAACAGGAAGAAGGACTACAAGGATGCCCTCCACATGAAGCTCAGGGATGACCTTAAGAGACTCAAGAAAATCTGTGGTAGGTGGAATGAGTGTGGAAGGGGGAAGTTTTTTTTCAAGGGGTATTTTTTATCTTTTCGCCACTTTAAGGGGGGTGGAACTAGATGA 414 0.4469 SLLANEDFQHILRVLNTNVDGKQKIMFALTSIKSIGRRFANICCKKADVDMNKRAGELGVAELDNVMTVVANPKQFKIPDWFLNRKKDYKDALHMKLRDDLKRLKKICGRWNECGRGKFFFKGYFLSFRHFKGGGTR* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0418 137 PANTHER 40S RIBOSOMAL PROTEIN S18-RELATED 1 107 - -
Lja6g0418 137 SUPERFAMILY S13-like H2TH domain 12 107 IPR010979 GO:0003676
Lja6g0418 137 Pfam Ribosomal protein S13/S18 13 107 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lja6g0418 137 ProSiteProfiles Ribosomal protein S13 family profile. 14 107 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Lja6g0418 137 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 1 107 - -
Lja6g0418 137 Gene3D - 1 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0418 Lja-Chr6 10141135 10142955 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0418 1 137 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 68.493 1.06e-63 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0418 K02964 - gmx:100306474 186.037