Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0414 ATGGCGTCCAGAGCCACTGGAACACTGATTTCGGCGTGTTTGCTATGGGTTTTCTTCCTCTGCGCGATCATTACATTCTTTCAGTTCATCTTGGTAGACAACGGAACCGACCAGAACAAGATCACCAACACACCGCAACATCCTCATCACGAGGAGGAGGACGATTTGGAGCGTGTCACCCACAAAGTGTATTTTGATGTAGAGATTGATGGAAAATCCGCGGGTCGCATAGTCATGGGCCTTTTTGGGAGTACAGTACCGAAAACTGTAGAAAACTTTCGAGCGCTTTGTACAGGAGAGAAAGGGGTGGGAAGAAGCCGGAAACCTCTTCATTATAAAGGGAGTGCATTCCACAGGATAATACCAAGCTTTATGGTCCAGGGGGGTGACTTCACCCTTGGTGATGGAAGAGGTGGAGAATCCATCTATGGTGATAAGTTTGCTGATGAAAACTTCAAGCTGAAGCATACTGGGCCAGGATATCTATCGATGGCAAATTCTGGGCAAGACACAAACGGCTCCCAGTTTTTCATAACAACAGTAAAAACCAGCTGGCTGGATGGGCGCCATGTTGTGTTCGGCAAGGTGCTTTCCGGCATGGAGGTTTTGTACAAGATTGAATCAGAAGGAAGTGAAAGTGGCTTGCCCAAAAGGAAGGTTGTCATATTGGACAGTGGAGAATTAACTTCATGA 693 0.469 MASRATGTLISACLLWVFFLCAIITFFQFILVDNGTDQNKITNTPQHPHHEEEDDLERVTHKVYFDVEIDGKSAGRIVMGLFGSTVPKTVENFRALCTGEKGVGRSRKPLHYKGSAFHRIIPSFMVQGGDFTLGDGRGGESIYGDKFADENFKLKHTGPGYLSMANSGQDTNGSQFFITTVKTSWLDGRHVVFGKVLSGMEVLYKIESEGSESGLPKRKVVILDSGELTS* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0414 230 CDD cyclophilin_ABH_like 61 226 - -
Lja6g0414 230 Gene3D - 49 230 IPR029000 -
Lja6g0414 230 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 112 129 IPR020892 GO:0003755|GO:0006457
Lja6g0414 230 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 64 227 IPR002130 GO:0000413|GO:0003755
Lja6g0414 230 SUPERFAMILY Cyclophilin-like 58 228 IPR029000 -
Lja6g0414 230 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 65 224 IPR002130 GO:0000413|GO:0003755
Lja6g0414 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 81 96 IPR002130 GO:0000413|GO:0003755
Lja6g0414 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 117 129 IPR002130 GO:0000413|GO:0003755
Lja6g0414 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 160 175 IPR002130 GO:0000413|GO:0003755
Lja6g0414 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 175 187 IPR002130 GO:0000413|GO:0003755
Lja6g0414 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 188 203 IPR002130 GO:0000413|GO:0003755
Lja6g0414 230 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 29 228 - -
Lja6g0414 230 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP21-2 29 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0414 Lja-Chr6 10110591 10114164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0414 75 225 U-box Gene Family AT5G67530 43.791 3.22e-28 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0414 K01802 - gmx:100798499 368.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0414 6 10110591 10114164 Lja6g0414 6 10110591 10114164 ECH
Lja6g1120 6 31176652 31179501 Lja6g0414 6 10110591 10114164 ECH