Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0407 ATGGGAAAGAAAAAGACGGACGATGCAGGCCAGTCTACAAAGGCTAAGGCAAGTAGCAAAGATGCTCCTAAGAAGGAAAAGTTTTCTGTCTCTGCCATGTTGGCCAGTATGGATGAAAAGCCTGATAAAGCCAAAAAAGTTGCTTCTTCCTTCAATAAGCCCAAGCCAAAACTGAAAGCTTCTACTTACACTGATGGTATTGATCTTCCTCCCTCTGATGATGAAGATGACGATCTATCTGAAGACGACTCCAAACAGTCCAGACCTGATTTCAAGCCACTTGAAGTATCTGTTACAGACAAAGAGTTGAAAAAACGTGAGAAGAAAGATATTTTAGCCGCCCATGCTGTTGAGCAGGCAAAGAAGGAAGCTCTTAGGGATGATCATGATGCTTTTACTGTTGTCATCGGAAGCCGGGCTTCAGTGCTTGATGGAGAAGATGATGCTGATGCTAATGTTAAAGATATAACGGTGGAAAATTTTTCTGTGTCTGCTCGAGGTAAGGAACTTCTGAAAAATACATCGGTGAAGATATCTCATGGGAAGCGATATGGTTTGGTTGGGCCCAATGGAATGGGCAAGTCCACACTATTGAAGCTTCTTGCTTGGAGGAAGATACCAGTACCTAAAAATATCGATGTCCTTCTGGTTGAGCAGGAGATAGTTGGGGATGATAAAACAACACTTGAAGCTGTTGTTTCAGCTAATGTTGAACTTGTTAATGTTCGACAAGAAGTTGCTGCTCTCACAAATGCAGCTTCTGTCGAGGACAGTGTAGATAAAGATAATAATTTGGAGGAAGATGAAGCAGGAGAAAAGCTAGCAGAGCTGTATGAAAAATTGCAGCTGATGGGGTCTGATGCTGCTGAATCTCAGGCATCAAAGATATTAGCTGGTTTGGGTTTTACAAAGGATATGCAGGGCCGTCCTACAAAATCCTTTAGCGGTGGCTGGAGGATGAGAATTTCTTTAGCTCGAGCACTTTTTTTGGAAGAGTACTTGTGCCGTTGGAAAAAAACTTTGGTGGTTGTCTCTCATGATAGGGATTTCCTGAATACAGTATGCATTGAGATTATTCATCTGCATGATTTGAAGCTTCATCTCTATCGTGGAAACTTTGATGATTTTGAGAGTGGGTATGAACAGCGTCGTAAAGAGATTAATAAGAAGTATGAGATTTATGACAAGCAAATGAAAGCGGCTAAAAGGAGTGGAAACCGGGCCCAACAAGAAAAGGTGAAGGATCGAGCTAAGTTTGCAGCAGCTAAGGAAGCATCTAAAAACAAGGGTAAGGGCAAGGTCAAGGTTGATGAGGATGAGACCGCACCAGACGCACCACAGAAATGGAGGGATTACAGTGTTGAGTTCCACTTTCCTGAACCTACTGAGCTCACACCTCCACTTATGCAGCTTATTGAAGTGAGCTTCAGCTACCCAAACCGAGAGGATTTCAGACTCTCAAATGTTGATGTTGGTATTGATATGGGGACTCGTGTTGCCATTGTTGGGCCTAATGGAGCTGGAAAATCTACACTGCTAAATCTTCTGGCTGGCGATTTGGTTCCATCTGAAGGTGAAGTTCGAAGGAGTCAGAAGTTAAGGATAAGAAGATATTCCCAACACTTTGTGGACCTTCTAACAATGGATGAAACTCCTGTGCAGTACCTTCTTCGTCTCCACCCAGACCAGGAGGGACTTAGCAAGCAAGAGGTTGTTCGTGCAAAGCTTGGTAAGTTTGGGCTGCCTAGTCATAACCATCTTACCCCTATTGTGAAACTATCAGGAGGGCAAAAAGCTCGGGTTGTCTTCACGTCGATATCCATGTCAAAACCTCACATTTTATTGTTAGATGAACCGACAAATCATCTGGATATGCAAAGTATTGATGCATTGGCTGATGCATTGGATGAATTCACTGGAGGAGTTGTTCTTGTTAGTCATGATTCAAGATTGATATCACGTGTCTGTGGTGATGAAGAAAGGAGTCAAATATGGATTGTTGAGGATGGCACTGTCAGAAATTTCCCTGGAACATTTGAGGATTACAAGGATGATTTGCTGAAAGAGATTAAAGCTGAAGTTGATGATTAA 2091 0.4256 MGKKKTDDAGQSTKAKASSKDAPKKEKFSVSAMLASMDEKPDKAKKVASSFNKPKPKLKASTYTDGIDLPPSDDEDDDLSEDDSKQSRPDFKPLEVSVTDKELKKREKKDILAAHAVEQAKKEALRDDHDAFTVVIGSRASVLDGEDDADANVKDITVENFSVSARGKELLKNTSVKISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEIVGDDKTTLEAVVSANVELVNVRQEVAALTNAASVEDSVDKDNNLEEDEAGEKLAELYEKLQLMGSDAAESQASKILAGLGFTKDMQGRPTKSFSGGWRMRISLARALFLEEYLCRWKKTLVVVSHDRDFLNTVCIEIIHLHDLKLHLYRGNFDDFESGYEQRRKEINKKYEIYDKQMKAAKRSGNRAQQEKVKDRAKFAAAKEASKNKGKGKVKVDEDETAPDAPQKWRDYSVEFHFPEPTELTPPLMQLIEVSFSYPNREDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPSEGEVRRSQKLRIRRYSQHFVDLLTMDETPVQYLLRLHPDQEGLSKQEVVRAKLGKFGLPSHNHLTPIVKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCGDEERSQIWIVEDGTVRNFPGTFEDYKDDLLKEIKAEVDD* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0407 696 ProSitePatterns ABC transporters family signature. 314 328 IPR017871 GO:0005524
Lja6g0407 696 Pfam ABC transporter 486 621 IPR003439 GO:0005524
Lja6g0407 696 SMART AAA_5 495 671 IPR003593 -
Lja6g0407 696 SMART AAA_5 180 364 IPR003593 -
Lja6g0407 696 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 328 696 - -
Lja6g0407 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 448 680 IPR027417 -
Lja6g0407 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 374 IPR027417 -
Lja6g0407 696 MobiDBLite consensus disorder prediction 421 445 - -
Lja6g0407 696 PANTHER - 4 330 - -
Lja6g0407 696 CDD ABCF_EF-3 470 671 - -
Lja6g0407 696 MobiDBLite consensus disorder prediction 1 95 - -
Lja6g0407 696 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 156 395 IPR003439 GO:0005524
Lja6g0407 696 CDD ABCF_EF-3 156 365 - -
Lja6g0407 696 Coils Coil 384 404 - -
Lja6g0407 696 Gene3D - 137 402 IPR027417 -
Lja6g0407 696 Gene3D - 432 695 IPR027417 -
Lja6g0407 696 Pfam ABC transporter 171 331 IPR003439 GO:0005524
Lja6g0407 696 PANTHER - 328 696 - -
Lja6g0407 696 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 469 694 IPR003439 GO:0005524
Lja6g0407 696 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 4 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0407 Lja-Chr6 10039878 10042034 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0407 469 672 Calmodulin-binding Proteins AT2G36910 26.222 1.42e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0407 K06184 - gmx:100806865 1160.59