Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0401 ATGACCTCATCCCCGCCTCAGCCACTTTCCGACTCCGATTCCGACGGCGGCGGCCCCTCCACCTCTCAGGCCCTCCGCCACACTGACCTCTCCGACTCCATCTTCAAATCCTACTTCGATTTCTCCGGCCACTCCTCCACCACCGCCACCACCGCCGACCTCTCCAAGATCCGCTCCTTCCTCACCTCCTCCTCCTCCGGCGCCCTCTCCTGCCTCATCTGCCTCGAACGCATCAAGCCCTCCGACCCCACATGGTCCTGCACCTCCCTCTGCTACGCCGTCTTCCACCTCTTCTGCATCCAGAGCTGGGCTCGCCAGGCCTCCGACCTCTCCGCCTTACGCGCCGCCACACGCCTCCCCATCTCCGCCGATCAGGCCTCCCAGTCCGCCCTCTGGAACTGCCCCAAATGCAGAGGCGAGTTCTCCAAGACCCAAATCCCCAAAACCTACCTCTGCTTCTGCGGGAAATTGGAGAACCCTCCCAGTGACGATCCATGGGTTTTGCCACATTCCTGCGGCGACGTTTGCCAGAGGCCATTGAAGCACAATTGCGGGCACCACTGTTTGCTCCTCTGCCACCCTGGGCCCTGCCCGTCCTGCCCGCAACTCGTTAAAGCTCGATGCTTCTGTGGATCACACCAAGACGTTCGAAGATGCGGGTTCAAGGAGTTTTCCTGTGAAAATCCTTGTTCCAAGTTGTTCGATTGTGGGGTTCACAGGTGCGTTGAGGTTTGCCACCGTGGTCCTTGCCCGCCTTGCCGGATTCGCGCCGTGTGTAGCTGCCAATGTAGGAAGGTGAGAGAGGAGAGGGAGTGCTGTGATCGTGTTTTTCGATGCGGCGAGCCGTGTGAGAAGAAGCTCACGTGTGGGAAGCATGTTTGTGAGAAGGGGTGTCATTCTGGGGAGTGTGGTGAGTGTCCATTGCAGGGGAAGAGAACATGCCCTTGTGGGAAGAGGGTGTATGAGGGAATGCCTTGTGATTCTCCTGTGCAGGTGTGTGGGGCCACCTGTGAGAAGATGTTGCCCTGCGGCTATCATAGGTGCCCCGAGAGATGCCATCGCGGGCAGTGCGTTGAGAATTGCAGGATTGTTGTGAGGAAGTCGTGTCGCTGTGGGAGCCTCAAGAAAGATGTTCCTTGCTATCAAGATTTGACATGTGATAGGAAGTGTCAGACGATGCGTGATTGTGGTAGGCATGCGTGTAAGCGTCGCTGCTGTGATGGGGATTGCCCTCCCTGTGCAGAGATATGTGGCAGGAGGCTTCGATGTAAGAGCCATAAGTGCCCTTCTCCATGCCATAGAGGTGCCTGTGCTCCTTGTCCAATAATGGTGACTATTTCGTGTGCATGTGGGGAGACACATTTTGAGGTTCCTTGTGGTACTGAAATGGATCAAAAGCCACCTAAATGTCCTAAACGATGTCCTATTACGCCTTTATGCCGGCATGCATTAAACGTCAAGCCACACAAATGCCATTATGGAGCCTGCCCTCCTTGTCGGCTACCTTGTGGAGAAGAGTACCAATGTGGCCATGCATGCAAATTAAGGTGCCATGGTGCTAAGCCTCCTCCTACTCCAGAATTTACTCTTAAACCAAAGAAAAAGAAGATTATACAACAAAGCGAAAGTATTCCTGGCACTCCATGCCCTCCTTGCCCAGAACTTGTGTGGAGACCATGTGTCGGGCAACACATTGGAGCAGAGAGAATGATGGTCTGCTCTCATAAATCACAGTTCTCCTGTGAAAACTTATGTGGTAATCCTCTACGATGTGGTAATCATTATTGTACTAAAACATGCCATGCCCTGGAGAACAAATCTTCCATGAACCAGTTACTGAGAGGCGAGCCTTGTGAAGATTGTTCTCTTTCTTGCCAAAAGGAAAGAGAGCCTACATGTCCACATCACTGCCCTCGGCGATGCCATCCTGGAGACTGTCCCCCATGCAAGGTTCTCATTAAACGGTCATGTCACTGTGGCGCAATGGTCCATGTTTTTGAGTGCATATATTACAACAGCTTGTCTGCAAAAGATCAAGTGTCTGTTCGTTCATGTGGTGGGCCATGTCATAGAAAGTTGCCAAATTGCACACATCTATGCCCAGAGACATGTCATCCTGGTCAATGCCCAAATCCTGAGAAATGCTGTAAAAAGGTCACTGTTCGTTGCAAATGCCATACATTGAAAAAGGAGTGGCTTTGTCAAGATGTTCAAGCAGCTTATCATCGCGCTGGTTGCAATCCAATGGATATACCAAAAAATCAATTTGGAATTGGACTTATTCCTTGCAATTCTGATTGTAAGAGTAAAGTGCAAATTGTTGAGTCAGAATTGCAATTGCGTAAATCTAGAGTTACAGAGGTAAAGGAGCCAGATAATGAAAAACCAGTTCCGAAGCGACGAAAAAGGCGTGACCGGGTTATAGAACCCAAGGAAACAACAAAACTACAGAAAATTATTTCCAGAACAAAGCAGCTTCTTCTATTGATCTTTATTTTGGTTATACTTGTTGCTGCTGCATATTATGGGTACAAGGGACTTTTACGACTCAATGATTGGATGAATGAAGTTGATGAAAAAAGGCAGAGATATTCCCGAATCAAATGA 2607 0.5044 MTSSPPQPLSDSDSDGGGPSTSQALRHTDLSDSIFKSYFDFSGHSSTTATTADLSKIRSFLTSSSSGALSCLICLERIKPSDPTWSCTSLCYAVFHLFCIQSWARQASDLSALRAATRLPISADQASQSALWNCPKCRGEFSKTQIPKTYLCFCGKLENPPSDDPWVLPHSCGDVCQRPLKHNCGHHCLLLCHPGPCPSCPQLVKARCFCGSHQDVRRCGFKEFSCENPCSKLFDCGVHRCVEVCHRGPCPPCRIRAVCSCQCRKVREERECCDRVFRCGEPCEKKLTCGKHVCEKGCHSGECGECPLQGKRTCPCGKRVYEGMPCDSPVQVCGATCEKMLPCGYHRCPERCHRGQCVENCRIVVRKSCRCGSLKKDVPCYQDLTCDRKCQTMRDCGRHACKRRCCDGDCPPCAEICGRRLRCKSHKCPSPCHRGACAPCPIMVTISCACGETHFEVPCGTEMDQKPPKCPKRCPITPLCRHALNVKPHKCHYGACPPCRLPCGEEYQCGHACKLRCHGAKPPPTPEFTLKPKKKKIIQQSESIPGTPCPPCPELVWRPCVGQHIGAERMMVCSHKSQFSCENLCGNPLRCGNHYCTKTCHALENKSSMNQLLRGEPCEDCSLSCQKEREPTCPHHCPRRCHPGDCPPCKVLIKRSCHCGAMVHVFECIYYNSLSAKDQVSVRSCGGPCHRKLPNCTHLCPETCHPGQCPNPEKCCKKVTVRCKCHTLKKEWLCQDVQAAYHRAGCNPMDIPKNQFGIGLIPCNSDCKSKVQIVESELQLRKSRVTEVKEPDNEKPVPKRRKRRDRVIEPKETTKLQKIISRTKQLLLLIFILVILVAAAYYGYKGLLRLNDWMNEVDEKRQRYSRIK* 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0401 868 CDD NF-X1-zinc-finger 333 382 - -
Lja6g0401 868 ProSiteProfiles Zinc finger RING-type profile. 71 138 IPR001841 -
Lja6g0401 868 SMART znfxneu3 236 255 IPR000967 GO:0005634|GO:0008270
Lja6g0401 868 SMART znfxneu3 423 442 IPR000967 GO:0005634|GO:0008270
Lja6g0401 868 SMART znfxneu3 509 554 IPR000967 GO:0005634|GO:0008270
Lja6g0401 868 SMART znfxneu3 210 232 IPR000967 GO:0005634|GO:0008270
Lja6g0401 868 SMART znfxneu3 591 623 IPR000967 GO:0005634|GO:0008270
Lja6g0401 868 SMART znfxneu3 289 308 IPR000967 GO:0005634|GO:0008270
Lja6g0401 868 SMART znfxneu3 396 415 IPR000967 GO:0005634|GO:0008270
Lja6g0401 868 SMART znfxneu3 633 651 IPR000967 GO:0005634|GO:0008270
Lja6g0401 868 SMART znfxneu3 343 363 IPR000967 GO:0005634|GO:0008270
Lja6g0401 868 SMART znfxneu3 480 501 IPR000967 GO:0005634|GO:0008270
Lja6g0401 868 SMART znfxneu3 184 202 IPR000967 GO:0005634|GO:0008270
Lja6g0401 868 SMART znfxneu3 696 718 IPR000967 GO:0005634|GO:0008270
Lja6g0401 868 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 10 865 - -
Lja6g0401 868 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 10 865 IPR034078 GO:0003700
Lja6g0401 868 CDD NF-X1-zinc-finger 172 220 - -
Lja6g0401 868 MobiDBLite consensus disorder prediction 1 23 - -
Lja6g0401 868 CDD NF-X1-zinc-finger 279 326 - -
Lja6g0401 868 Pfam NF-X1 type zinc finger 490 500 IPR000967 GO:0005634|GO:0008270
Lja6g0401 868 Pfam NF-X1 type zinc finger 184 201 IPR000967 GO:0005634|GO:0008270
Lja6g0401 868 Pfam NF-X1 type zinc finger 289 307 IPR000967 GO:0005634|GO:0008270
Lja6g0401 868 Pfam NF-X1 type zinc finger 236 254 IPR000967 GO:0005634|GO:0008270
Lja6g0401 868 Pfam NF-X1 type zinc finger 591 601 IPR000967 GO:0005634|GO:0008270
Lja6g0401 868 Pfam NF-X1 type zinc finger 635 650 IPR000967 GO:0005634|GO:0008270
Lja6g0401 868 Pfam NF-X1 type zinc finger 343 361 IPR000967 GO:0005634|GO:0008270
Lja6g0401 868 Pfam NF-X1 type zinc finger 417 441 IPR000967 GO:0005634|GO:0008270
Lja6g0401 868 Pfam NF-X1 type zinc finger 396 413 IPR000967 GO:0005634|GO:0008270
Lja6g0401 868 CDD NF-X1-zinc-finger 386 434 - -
Lja6g0401 868 CDD NF-X1-zinc-finger 413 461 - -
Lja6g0401 868 MobiDBLite consensus disorder prediction 784 804 - -
Lja6g0401 868 ProSitePatterns Zinc finger PHD-type signature. 71 137 IPR019786 -
Lja6g0401 868 CDD NF-X1-zinc-finger 226 274 - -
Lja6g0401 868 SUPERFAMILY RING/U-box 68 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0401 Lja-Chr6 9971133 9987147 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Lja6g0401 zf-NF-X1 0.018 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0401 K15683 - gmx:100799540 1537.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0401 6 9971133 9987147 Lja6g0401 6 9971133 9987147 ECH