Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0400 ATGAAGAAACCACCTTCCTCCGCCGTCAAACTCCTTCTCGCCGCCGTATTACTTATACTCTCTTTGCTACCTTCTTCACTTCACGCTCTCGGCTCCGGCACCACCTTGGCCGTCACCGACGCCCCGGCCACCGTGTGCGGCATCGTAGCAGGGGAAGCCACGCAGAGCATTCAGTGTTACCGTCAGGGGCAGACTGTTTCCGTCGTCCCCAACGTTTCGTTTTCTTCCATCTCCGGCGGGAGGAGCTTCTTCTGCGGCCTCAGGTCCGGTAACCACAGCTTGCATTTGTGGGATACCGCTACATCTTCCTTCCAGAGGAAGAGGCTTTACAACAATGGCTCTGTTCCGTTGGAGAATCTCACTGTTGGGGAGGACCAAGTTTGCGCCACGGTGGTCGGTGCCGGGACGGTGGTTTGTTGGAGAAGCCATAGCGAGCATGAATCGCCATCTGGGTCGGATCAGTTTGCTTTGATTTCATCTGGGTCGGGGTTCTCTTGTGGGATTCTGAAGAATGGTTCAAGGGTTCGGTGTTGGGGGGAAAGGGTTGTTGCGAGTGAGTTGGAAAATGGGTTTGGGAACATGTCAATGTTGAGTGTTGTAGCTGGTGGTTCACACGTTTGTGGGTTGAATTCAACTGGGTTTTTGGTTTGCAGAGGAAGTCGCAACAGTTCTGGGCAACTGGATGTTCCTCAAGGTGGAGCTTTTGAGTATGGTGGGTTGGCACTTGGAGCTGAACATGGTTGTGCGATTAGAAGGTCGAATGGTTCGGTTGTTTGTTGGGGTGGTGATGGGAAATTCTCGGTGGATTCTACAAAAGATGTGTTCTTTGAGTTGATTGTTTCTGGGTCCAATTTCACTTGTGGGTTAACATCAAGCAATTTTTCAGTTGTGTGTTGGGGCCCTGGTTGGTCTAATAATGATTCTAGCTCAAGATTTGAGCTTCCCTTGTCTCCTATTCTTCCAGGGCCTTGTGTTCAATCTTCTTGTAGTGAGTGTGGTATATATCCTAATTCTGAAACCTTATGCTCTGGCTCTCGTCACATTTGCAAGCCAAATAATTGTAGGACTCAAATGACAGCACCGCCGCCACCTCCACCTCCGCTGCATCCGCCACCTCCGGCAACACCACCGCCATCGTCATCTCGGTCAAAGACCTTGACAAGGGGCTTGTTGGCTTTTGCCATTGTTGGATCAGTGGGAGCTTTTGCTGGTATTTGCACATTAGTTTATTGGTTATGGAATGGAGGTTGTTTTTGCAAGAAGAAAGTTCACAATTCAGTGCAACCCACAATTACAAGAGGTAGCAGCAATTCCAGTGGTGGAAGCACTTCCACCAAATCCAATCATAGCCCATCTTCAATAGCAGCTAGCATTCGACGTCAGAGCTCAAGAATCATGAGGCGCCAGAGAAGTGGAACCTCATCAGCAAAGCACCCAGAAAGAGCAGAGGAATTCACCCTTTCTGAGCTTGCATCAGCCACCAACAATTTCTCACTCGAGAACAAGATTGGTGCTGGAAGCTATGGCATTGTCTACAGGGCGAAACTCGCAGACGGCCGTGAGGTGGCGATCAAGCGGGGAGAAACTGGTTCGAAGAAGAAGAAGTTCCAAGAGAAAGAGACTGCATTTGAGTCTGAATTGTCCTTCTTGTCTAGGCTACACCACAAGCACTTGGTTAGGCTAGTTGGGTACTGTGAGGAGAAAGATGAGAGGCTCTTGGTGTATGAGTACATGAAGAATGGAGCACTCTATGATCACTTGCATAACAAAAATAATGTGGAAAAGAGTAGCAGTGTGTTGAATTCATGGAAAGTGAGGATCAAGATTGCTTTAGACGCTTCCCGGGGGATAGAGTATCTCCACAACTACGCAGTTCCATCGATAATTCACAGAGATATCAAGTCTTCCAACATCCTCCTCGACGCGAATTGGACTGCGAGAGTGTCCGATTTTGGATTGTCCTTGATGAGTCCTGAACACGACCGCGATTACAAGCCGGTGAAGGCGGCAGGAACGGTCGGATACATTGATCCTGAGTACTATGGTCTAAATGTGCTGACAGCAAAGAGTGATGTGTATGGTCTTGGAATTGTGCTGCTAGAACTATTAACAGGAAAGAAAGCTATATTCAAGCATGGTGAAAATGGGGGAACGCCACTCAGTTTGGTGGATTATGCTGTTCCTTCTATTTTGGCCGGGGAATTGGTGAAGGTTTTGGATCCGAGAGTTGGCACACCGGAGATGAATGAATCAGAGGCGGTGGAGTTGGTGGCTTACACTGCTTTGCATTGTGTGAATTTGGAAGGGAAAGATAGGCCAACCATGGCAGATATTGTGACGAATTTGGAGAGGGCTTTGTTTCTTTGTGATGGTGGTAGCCATGACAGTGTTTCAAGTATTACAATCTCTGTTGTTTCAGATTGA 2424 0.4831 MKKPPSSAVKLLLAAVLLILSLLPSSLHALGSGTTLAVTDAPATVCGIVAGEATQSIQCYRQGQTVSVVPNVSFSSISGGRSFFCGLRSGNHSLHLWDTATSSFQRKRLYNNGSVPLENLTVGEDQVCATVVGAGTVVCWRSHSEHESPSGSDQFALISSGSGFSCGILKNGSRVRCWGERVVASELENGFGNMSMLSVVAGGSHVCGLNSTGFLVCRGSRNSSGQLDVPQGGAFEYGGLALGAEHGCAIRRSNGSVVCWGGDGKFSVDSTKDVFFELIVSGSNFTCGLTSSNFSVVCWGPGWSNNDSSSRFELPLSPILPGPCVQSSCSECGIYPNSETLCSGSRHICKPNNCRTQMTAPPPPPPPLHPPPPATPPPSSSRSKTLTRGLLAFAIVGSVGAFAGICTLVYWLWNGGCFCKKKVHNSVQPTITRGSSNSSGGSTSTKSNHSPSSIAASIRRQSSRIMRRQRSGTSSAKHPERAEEFTLSELASATNNFSLENKIGAGSYGIVYRAKLADGREVAIKRGETGSKKKKFQEKETAFESELSFLSRLHHKHLVRLVGYCEEKDERLLVYEYMKNGALYDHLHNKNNVEKSSSVLNSWKVRIKIALDASRGIEYLHNYAVPSIIHRDIKSSNILLDANWTARVSDFGLSLMSPEHDRDYKPVKAAGTVGYIDPEYYGLNVLTAKSDVYGLGIVLLELLTGKKAIFKHGENGGTPLSLVDYAVPSILAGELVKVLDPRVGTPEMNESEAVELVAYTALHCVNLEGKDRPTMADIVTNLERALFLCDGGSHDSVSSITISVVSD* 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0400 807 CDD STKc_IRAK 503 784 - -
Lja6g0400 807 ProSitePatterns Protein kinases ATP-binding region signature. 503 525 IPR017441 GO:0005524
Lja6g0400 807 MobiDBLite consensus disorder prediction 430 481 - -
Lja6g0400 807 Gene3D - 26 190 IPR009091 -
Lja6g0400 807 Gene3D - 191 359 IPR009091 -
Lja6g0400 807 MobiDBLite consensus disorder prediction 358 383 - -
Lja6g0400 807 Pfam Protein kinase domain 498 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0400 807 MobiDBLite consensus disorder prediction 358 379 - -
Lja6g0400 807 MobiDBLite consensus disorder prediction 430 472 - -
Lja6g0400 807 SUPERFAMILY Protein kinase-like (PK-like) 477 782 IPR011009 -
Lja6g0400 807 Gene3D Phosphorylase Kinase; domain 1 456 577 - -
Lja6g0400 807 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 9 803 IPR044815 GO:0004674
Lja6g0400 807 SMART serkin_6 497 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0400 807 ProSiteProfiles Protein kinase domain profile. 497 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0400 807 Gene3D Transferase(Phosphotransferase) domain 1 578 789 - -
Lja6g0400 807 SUPERFAMILY RCC1/BLIP-II 29 262 IPR009091 -
Lja6g0400 807 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
Lja6g0400 807 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 9 803 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0400 Lja-Chr6 9965816 9969296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0400 1 807 Receptor kinase-like Gene Family AT3G55950 59.326 0.0 843
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Lja6g0400 Pkinase 4.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0400 - - gmx:100786639 1137.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0400 6 9965816 9969296 Lja6g0400 6 9965816 9969296 ECH
Lja6g1117 6 31100161 31102886 Lja6g0400 6 9965816 9969296 ECH
Lja6g0400 6 9965816 9969296 Lja6g0400 6 9965816 9969296 PCT