Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0382 ATGGTTGAATACCACCATCATGCACAACAGATATTGAGAACAAACGAAGATCAGACATTCGACCATAAGGACCTTGCCGACGGATTGAAAATATTGGGGAACAATGCAACGCACGTAAAATGCTATGGAAAAGCTGTTGTGATGTACAATTGTGCTATTGCTCTATGCAAAGAAAATGCTATATACTTTTGTAACAGAGCTGCAGCTTTTACTGAAATTGGAAAATTTAATGAAGCAATTAATGATTGTCGTGAAGCAATAAAGATAAATCCAAGATATGCTATGGCATTTTATCGCCTTGGGTATGCCTATTATGAACAAGGCAAGAACCTTGACGCTATCCGTGAAGGCTTTGTTAAAGTTTTGCAACTAGAACCTCATAATCAAGCTGCCAAGCTGGCTGATTTCAAGTTCGAAGCTGAAGTAGAACAAATGAGAGAGCAGTTTGAGAGATTAATGGGGGATGGAAGTGTGACCCAAGCAGCTGCCCAACAAAGCACACTGTTGGCGATTGAGGAAGTTGGTGATGGGATATTTGAAGTGATTGAAGAAGACGGGGAGATAAATGGTGACAATGAGGACACCATAACTCTTGCTGATTTAATTGAATTATATGTGCGCACCACCCCTCCACCCGAATGA 642 0.4065 MVEYHHHAQQILRTNEDQTFDHKDLADGLKILGNNATHVKCYGKAVVMYNCAIALCKENAIYFCNRAAAFTEIGKFNEAINDCREAIKINPRYAMAFYRLGYAYYEQGKNLDAIREGFVKVLQLEPHNQAAKLADFKFEAEVEQMREQFERLMGDGSVTQAAAQQSTLLAIEEVGDGIFEVIEEDGEINGDNEDTITLADLIELYVRTTPPPE* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0382 213 ProSiteProfiles TPR repeat profile. 60 93 IPR019734 GO:0005515
Lja6g0382 213 Gene3D Tetratricopeptide repeat domain 2 153 IPR011990 GO:0005515
Lja6g0382 213 Pfam TPR repeat 69 108 - -
Lja6g0382 213 SUPERFAMILY TPR-like 23 133 IPR011990 GO:0005515
Lja6g0382 213 SMART tpr_5 26 59 IPR019734 GO:0005515
Lja6g0382 213 SMART tpr_5 94 128 IPR019734 GO:0005515
Lja6g0382 213 SMART tpr_5 60 93 IPR019734 GO:0005515
Lja6g0382 213 PANTHER LD24721P 14 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0382 Lja-Chr6 9658083 9659840 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0382 25 116 U-box Gene Family AT3G07370 30.435 4.03e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0382 K16365 - lja:Lj0g3v0331449.1 179.874