Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0381 ATGGAAAATTACTATCACTCTGGCTGCCATAGCTATGCTCATTCTCCCTTTCCAGTGCCTCCTCATATCTCTGCCTCTCTTCAATTTAGTGAGTTCCACTCATGGTCTGAACCCATTGAAGGAGCTTCAGAAGAGAGAAGAATAAGTGCTTCCAAAAGTCACAGTCAAGCAGAGAAACGGCGCAGGGATAGGATCAATGCACAACTTGCAACTCTCAGAAAACTGATTCCTAAGTCTGACAAGATGGACAAGGCAGCTTTACTAGGGAGTGTGATAGATAAAGTTAAAGATCTAAAGCGAAAAGCAATGGAAGTTAGCAGAGTGTACACAGTTCCAACTGAAATTGATGAAGTAACAATTGACTATGACCATGTTCAAGATGAAAGCTGCACCAAAGTGAACAAATGCAAGGACAATATCGTCATCAAAGCTTCTGTTTGTTGTGATGATAGACCAGAATTGTTCTCTGAACTCATCCAAGCATTTAAAGGATTGAGACTCACAGCAGTTAAAGCTGACATAGCCAGTGTTGGTGGAAGGATTAAGAGCATATTAGTGCTTTATTCCAAGGATACTGCAGAAAATGTTTGCCTCAGCACTCTCAAACAGTCCCTTAAATCAGCAGTCACCAAAATTGCTGGATCTAATTGTCCCACTAGAAGTAAGAGGCAAAGATTCTTCATACCTTCTCATTTCTTACAGTAA 705 0.4071 MENYYHSGCHSYAHSPFPVPPHISASLQFSEFHSWSEPIEGASEERRISASKSHSQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVIDKVKDLKRKAMEVSRVYTVPTEIDEVTIDYDHVQDESCTKVNKCKDNIVIKASVCCDDRPELFSELIQAFKGLRLTAVKADIASVGGRIKSILVLYSKDTAENVCLSTLKQSLKSAVTKIAGSNCPTRSKRQRFFIPSHFLQ* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0381 234 CDD bHLH_AtAIG1_like 44 123 - -
Lja6g0381 234 MobiDBLite consensus disorder prediction 43 63 - -
Lja6g0381 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 50 106 IPR036638 GO:0046983
Lja6g0381 234 SMART finulus 55 104 IPR011598 GO:0046983
Lja6g0381 234 Gene3D - 43 108 IPR036638 GO:0046983
Lja6g0381 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 98 IPR011598 GO:0046983
Lja6g0381 234 PANTHER TRANSCRIPTION FACTOR BHLH30 18 232 IPR045847 GO:0003700|GO:0006355
Lja6g0381 234 CDD ACT_UUR-ACR-like 145 180 - -
Lja6g0381 234 Pfam Helix-loop-helix DNA-binding domain 52 98 IPR011598 GO:0046983
Lja6g0381 234 PANTHER TRANSCRIPTION FACTOR BHLH51 18 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0381 Lja-Chr6 9636483 9638005 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0381 1 232 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 39.608 4.22e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja6g0381 HLH 2.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0381 - - gmx:100799687 369.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0381 6 9636483 9638005 Lja6g0381 6 9636483 9638005 ECH
Lja6g0381 6 9636483 9638005 Lja6g0381 6 9636483 9638005 PCT