Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0380 ATGTCCAGCCCAGATACTCGCTCACTGAACTGGCGCTACACGGAGATTGACGACAGGGATCTTGAAATCCGAGGCAGGACACTGTTCTTCATCATCGTGCTGTTCTCCATTATAATCCTCGTCGCGGTTCTCTTCTTCTACACGCGCTGGATCTGCCGCTACCACAACGACCTCTCTGTCCCCACCGCCTTCCACGCGCCGCCGCGTCCGGCGCAGCAGGGGCTGCCCCCCACCGCGATCAAGAAGCTTCCCATAATCCTGCACCAGGCACCGGCGGACACTGACGGCGGCGCGTGGGAGGACATGGAGTGCAGCATCTGCCTTGGGGAGTTCAGGGACGGTGAGAAGCTGAAGGTGTTGCCGGCGTGTGAACATAGTTTTCACTGTGAGTGTGTTGATAAGTGGCTCACTCATCATTCTAGTTGTCCATTGTGTAGGGCTTCTCTTAAGGTTGAATCTTTGTTTCCAAAGATTTTGATTCAGGAACCACCCATTAGAATTGACATCCGGTTATAG 516 0.5446 MSSPDTRSLNWRYTEIDDRDLEIRGRTLFFIIVLFSIIILVAVLFFYTRWICRYHNDLSVPTAFHAPPRPAQQGLPPTAIKKLPIILHQAPADTDGGAWEDMECSICLGEFRDGEKLKVLPACEHSFHCECVDKWLTHHSSCPLCRASLKVESLFPKILIQEPPIRIDIRL* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0380 171 Pfam Ring finger domain 103 146 IPR001841 -
Lja6g0380 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 152 IPR013083 -
Lja6g0380 171 PANTHER RING-H2 FINGER PROTEIN ATL66 2 161 - -
Lja6g0380 171 SUPERFAMILY RING/U-box 98 151 - -
Lja6g0380 171 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Lja6g0380 171 SMART ring_2 104 145 IPR001841 -
Lja6g0380 171 CDD RING-H2_PA-TM-RING 103 146 - -
Lja6g0380 171 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 2 161 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0380 Lja-Chr6 9624067 9625288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0380 2 153 C3H Transcription Factor Family AT3G11110 40.506 3.32e-34 116
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0380 6 9624067 9625288 Lja6g0380 6 9624067 9625288 ECH
Lja6g0380 6 9624067 9625288 Lja6g0380 6 9624067 9625288 PCT