Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0379 ATGGCAAGCTCAGTGCGTGTGAAAGAAGCTGTGGTAGTGACCCCTTCAGAGCCCACCCCAACTGGTGTCCTCTTACTCTCAGCCCTTGATTCCCAACTCTTCCTTCGCTTCACTGTAGAGTATCTCCTCGTGTACAGGCCCGGCCCGGGATTGAACCAGGCTACCACCGCGGCTTGTTTGAAAGCTGCGGTAGCTAAAGCCCTGGTTCCTTACTACCCGCTGGCCGGGCGTGTCAGAGCCCGAGCCGACAGCCCGGGCCTGGAGGTACTCTGTCGAGCCCAAGGAGCTGTCTTCATCGAAGCCCATTCAGACCGTTACACTCTCAACGACTTCGAGAGAGCCCCAAAAACAGTCACCCACTGGAGGAAACTCCTGTCAATAAACGTCCCCGGCGTCCTCAGTGGCTCGCCGCCACTAGTCGTTCAGCTAACATGGCTCGCCGACGGGGCCGCTGCCGTCGGCATCGGGATTAACCACTGCATCTGCGACGGAATCGGCGGTGCTGAGTTTCTCAACCACGTCTCTGACTTAGTTTCTGGTAAACTCGCCGTTCCGAAACCGAGGCCTATTTGGGATCGCCACCTTCTGAACCCGCCACCGGGGAGAACGAATCGGCGGGCGAACACAGCGCTCCACCCCGAGTTCAACCGCGTTCCGGATCTATGCGGGTTTATGAACCGGGTCACGAGCTCTCTCAGGCCAACCTGCATTGTTTTCGACAAGAGACGCATCAACGAGTTGAAATCCGCAGCTTGGTCAACGAGTCGACCCGGCGATTCACCACCCACGTCGTTCGAAGTGCTCGCTGCACACGTGTGGAGGAGTTGGGCGAGGGCGATGGGGTTTCCACCAAGCCAAACGCTGAAACTCCTCTTCAGCATCAACGTGAGGAACCGGGTCAAACCGGGTCTACCCGACGGGTACTACGGCAACGCGTTCGTTCTGGGTTGCGCGCAGAGCAGCGCGAGGGAACTGGGTGAGAAAGGTGTCGGGTTCGGGTCGGGTCTGGTGAAAACGGCGAAGGAAAAGGTGGATGGTGAGCACGTGCGGAGGGTGACCGAGTTGGTATCCGAGTCAAGAGCGAGTCCTGACTCGGTTGGGGTGCTGATTCTGTCACAGTGGTCGAGGTTGGGTCTTGAGAACGTTGAGATTGGAATGGGGAAACCTTTGCATGTGGGGCCCATTTGCTGTGATCGGTACTGTTTGTTTTTGCCGGTGAAGGGTGAAAGGGACAGTGTTAAGGTCACGGTGGCGGTTCCCGCCGCTGCCGTTGACAGTTACCACCGTTTTCTCAGGGAATCGCTTTCATGA 1311 0.5782 MASSVRVKEAVVVTPSEPTPTGVLLLSALDSQLFLRFTVEYLLVYRPGPGLNQATTAACLKAAVAKALVPYYPLAGRVRARADSPGLEVLCRAQGAVFIEAHSDRYTLNDFERAPKTVTHWRKLLSINVPGVLSGSPPLVVQLTWLADGAAAVGIGINHCICDGIGGAEFLNHVSDLVSGKLAVPKPRPIWDRHLLNPPPGRTNRRANTALHPEFNRVPDLCGFMNRVTSSLRPTCIVFDKRRINELKSAAWSTSRPGDSPPTSFEVLAAHVWRSWARAMGFPPSQTLKLLFSINVRNRVKPGLPDGYYGNAFVLGCAQSSARELGEKGVGFGSGLVKTAKEKVDGEHVRRVTELVSESRASPDSVGVLILSQWSRLGLENVEIGMGKPLHVGPICCDRYCLFLPVKGERDSVKVTVAVPAAAVDSYHRFLRESLS* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0379 436 Gene3D - 1 216 IPR023213 -
Lja6g0379 436 Gene3D - 225 430 IPR023213 -
Lja6g0379 436 PANTHER HXXXD-TYPE ACYL-TRANSFERASE FAMILY PROTEIN 6 430 - -
Lja6g0379 436 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 6 430 - -
Lja6g0379 436 Pfam Transferase family 4 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0379 Lja-Chr6 9534618 9536400 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0379 5 433 Monolignol Biosynthesis Gene Families AT5G48930 26.966 2.60e-45 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0379 - - gmx:100803812 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0379 6 9534618 9536400 Lja6g0379 6 9534618 9536400 ECH
Lja6g0379 6 9534618 9536400 Lja6g0379 6 9534618 9536400 PCT