Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0378 ATGAAGGGCTATGAGCCTCGTTCAAGCTCTTCATGTGCAGCTTGCAAGCTATTGAAAAGGAGATGCACACCCAATTGCATTTTTGCGCCTTACTTTCGCTCCGATGAGCGCAAGAAATTCACAAAAGTCCACAAGGTATTTGGAGCGAGCAATGTGAGCAAGATCCTCATTGAAGTGCCGGAAGAGCAGAGGGAGGACACGGTGAATTCACTGGCGTATGAGGCAGAGGAAAGGCTCAAAGACCCTGTTTATGGATGCATTGGTTCAATTGCCTTGTTGCAGAGGAAGATGGTGGAGCTTCAACATGACCTCGCCATTGCTAAGGATCGTCTTGCTCGTGTTCATGCTGCTGCTGCTACTAGTACCATGCTTTCTTCTGCTGACATCTTGCATGCTCATGTTAGCTTGCCTCCATTTCCTGATTTTCCCACTTGCAATGATTTCAATGATGATATGTTCTGCCAAAGCTCTTCATCATCTCAATCATTCGGACGGCATGAAATGGTGGATGATTTTAGTGAAATCCCATATATGTTTTGA 540 0.4556 MKGYEPRSSSSCAACKLLKRRCTPNCIFAPYFRSDERKKFTKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEERLKDPVYGCIGSIALLQRKMVELQHDLAIAKDRLARVHAAAATSTMLSSADILHAHVSLPPFPDFPTCNDFNDDMFCQSSSSSQSFGRHEMVDDFSEIPYMF* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0378 179 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Lja6g0378 179 Coils Coil 90 110 - -
Lja6g0378 179 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 173 - -
Lja6g0378 179 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Lja6g0378 179 PANTHER LOB DOMAIN-CONTAINING PROTEIN 21 1 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0378 Lja-Chr6 9500051 9500590 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0378 1 142 AS2 family AT3G11090 68.056 4.41e-65 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lja6g0378 LOB 1.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0378 - - gmx:100791250 283.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0378 6 9500051 9500590 Lja6g0378 6 9500051 9500590 ECH