Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0377 ATGAGGAAGCTAGGCTCTGCTAGGGCTTCATCTGCTCCAATTTCTAAAGCGACTTCCAATGCTTTCTCAGGGCGAGGTGGGGCTTCAGTTATTGGTGTCTGCGATGGTGATGAAGTGGAGCAAGACGGTGGCTCCGATGGGGAGCGCTTGGATGGCGGCGGTGGCTTTAAAAGTCCATGCTTCACTCTGTTTGTGGACGGTATTTCCGAATCTGTGGGTTACCATCACGTGCGGGATCTTTTCTCGAAGCATGGCAAGGTGACAAATGTTTTCATCCAGCGGCAGCGGAAGTCTGGGCGTAGATTCTGCTTCGGTTTTGTTCGTTATGTTCTGAAGGAGGATGCCTTTTCAGCGATGAAGCGTCTTGACGGTTTTAGGATTGGTGGCACCTTCTTGTCGGTTTCTCCGGCGAAGATCTCACGGTCGTGCTTTAAGGGTCTGGATCAGCGGGCTCGTGTTTCTCAGGTTCCAGCGAAGTCTTCTAGTTCTCAGTTTCGGCAGTCAAGGGTGTTGGGGTCGTCCATGCCGTCAAGGTCCTGGCGTGAAGTTGTTTTGGGGAAGCCAAAGGGGTGCAACTTGATTCCAGTCGGTGCTTTTGTGGATCCCTTGCTTGCGGTTAGGGAGTTGGATTGTGCTTTGGGGCCAAGAATCCCGGACGTTGTGTTATTCCTTGAATTGGCTGAGGAGGTGCGGTGTGCTCGAGAGGTAGCGGTTGGAAGCGGTGATGGTGATTCTGTCTCTCTAGCTTCTGTCTCTTTGTTGCGGCCTGAATTTGAAGAGACAATGGGGCATCATAGTGGGAGGAGAGAGACGGAAATCGCTACAGATGTGCAGCAAGGGATTGGTGGAGTTAATGTATTATCATTTAAAGTTGTGCCTTTTTTGGTGGGAGGTGTTAATGGTTTTGATTTTTTCAAGGAGCATAATTTTTATTTGGAAGGCTCTCTCCCCATTATGCAGTTGCGGCTTGGTCCCTTTGAGCTATTGTGGGTTTCTAATTGGTTTGTAAACACTGTCATGCATATTCTGTGTGCTGATGTTGGTTCACTATGTTCATCTGGCCCTGGCTCTTTCTTTTGCAATTATAGTCTGCCATCTTTGGAGGGTGATGTTTTATGTCCTCCTTCCTCACCGCCTCGAGTTGCTTGGTCTCTGCGAGCAGTGTCCCTCCGCTCTCTTCTTCTTTCTTATCGGGCTGTTCGTCAAGCTTTGAGGTTGGGTCTTGCTCAGCTCCGGAAGTTCATGAAAGTGTGGGTGTAG 1260 0.4968 MRKLGSARASSAPISKATSNAFSGRGGASVIGVCDGDEVEQDGGSDGERLDGGGGFKSPCFTLFVDGISESVGYHHVRDLFSKHGKVTNVFIQRQRKSGRRFCFGFVRYVLKEDAFSAMKRLDGFRIGGTFLSVSPAKISRSCFKGLDQRARVSQVPAKSSSSQFRQSRVLGSSMPSRSWREVVLGKPKGCNLIPVGAFVDPLLAVRELDCALGPRIPDVVLFLELAEEVRCAREVAVGSGDGDSVSLASVSLLRPEFEETMGHHSGRRETEIATDVQQGIGGVNVLSFKVVPFLVGGVNGFDFFKEHNFYLEGSLPIMQLRLGPFELLWVSNWFVNTVMHILCADVGSLCSSGPGSFFCNYSLPSLEGDVLCPPSSPPRVAWSLRAVSLRSLLLSYRAVRQALRLGLAQLRKFMKVWV* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0377 419 SUPERFAMILY RNA-binding domain, RBD 57 138 IPR035979 GO:0003676
Lja6g0377 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 63 132 IPR000504 GO:0003723
Lja6g0377 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 61 139 IPR000504 GO:0003723
Lja6g0377 419 CDD RRM_SF 63 135 - -
Lja6g0377 419 Gene3D - 34 142 IPR012677 -
Lja6g0377 419 SMART rrm1_1 62 135 IPR000504 GO:0003723
Lja6g0377 419 PANTHER TRANSFORMER-2-RELATED 46 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0377 Lja-Chr6 9497362 9498625 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0377 58 138 Eukaryotic Initiation Factors Gene Family AT1G22760 31.707 3.24e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0377 - K25092 lja:Lj0g3v0310589.1 114.775