Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0376 ATGATGATCTCCTCAACCTTCTTACCGAATAAGTCTTTGCTAGATTCATTGATTAACATATCCAATGAAGCTAGCTCAATGGAGAAGTTTCCATTTCTACATGCAAGGAATGTCACATCCATGATAAGGAGGATCAAGGTTCTTTCTTCTTTGTTTGAAGAGATTCAAGTATCAGATACTCCACTTCCTCCTTCTTCAATCCTGTGTTTCACTGAGTTCTTTTCTTTGATCACAAAAGTCAAGCTTTTGATCCAAGAATGCAAGGATGGAAGCAATCTCTGGGGTCTAATACAGTTAGAGTTCATCTCCAACCAGTTTTATGTGCTGGCAAAGGAAATGGGAAGGGTCCTTGATATCCTTCCTGTGAGTTTGCTTAACATAACAACAGATATGAGGGAACAACTAGAGATTCTGCATAAACAGACAAAGAAGATTGAGTTGTTCATTGATCCTAGAGATCTTCAAAGAAGAGATCAGCTCCTACAAGTGATGGCCAACAAAAGTTTACCACACAACAAGAGCAAAGGCTTCATTGATTTGAGGAAATTGGAAGAGATATTAAGCAGCATTGGTTTCAGAAGTCCTTCAGATTATGATAGAGAAATATCAAAGCTAGAGGCTGAAGCTCAGAATCAAGCAGGCACAGGAGGACTAATGGTGGTCTCTAATATAAACAACCTCTTATGTGTGGTTTCACATGCCAAATCAATGTTTTTCGAAGATGGAGAAAGTAAAAAAGATGAAAGAAACTGCAAGAAACTATCTGAATTTCTGTATGTTAAAATCCATGATAACCCTGTGATTTTATCATCTGGGCACACTTATGATCGAAATTCTATTGCAAAGTGGATAAACTCAGGGCACCATACTTGCCCCAAGAGTGGACAAAGGTTAATTCACACAGCTCTAATACCCAATTTTGCATTGAAGAGTCTTATACAACAATGGTGCCAAGAAAACAAGGTCCCAGTAAACGATCCTACTTCTTTGCTTTCAGAGGGAAACAACAGCAAGAAGAACCTGAATGAGAATGCTGTTGATCAGGTTTCTACAAACCAGGGATCTACAGATTCTGTCAAAATGACAGCAGAGTTTCTTGTTGGGAAATTGGCAACTGGCTCAGCTGACATCCAAATGAAAGCAGCATATGAGCTTCGGCTACTCGCAAAATCCGGCATGAATAACAGAAGAATTATAGCTGAGGCTGGGGCTATTCCGTTTCTAGTGACGCTACTAGGTTCCAATGATTCAAGAATCCAGGAAAATGCAGTCACAGCTTTGCTAAACCTTTCGATCTTCGACAACAACAAGATCTTGATAATGGCAGCTGGAGCAGTAGAAAATATAATAGGAGTGCTGGAATCAGGGAAGAGCATGGAAGCAAGAGAAAATGCAGCAGCAGCAATCTTCAGCCTTTCCATGGTAGATGAATGTAAAGTAACAATTGGAACTCATCCAAGGGCCATACCTGCTTTAATTGGACTCCTTAAAGAAGGAACTGCTACAGGGAAAAGAGATGCAGCTACTGCACTTTTCAATCTTGCAGTTTACAAGCACAACAAGTGCTTGCTTTGCTTCTGGGTTGCTCTCAAGGTCTAG 1599 0.4015 MMISSTFLPNKSLLDSLINISNEASSMEKFPFLHARNVTSMIRRIKVLSSLFEEIQVSDTPLPPSSILCFTEFFSLITKVKLLIQECKDGSNLWGLIQLEFISNQFYVLAKEMGRVLDILPVSLLNITTDMREQLEILHKQTKKIELFIDPRDLQRRDQLLQVMANKSLPHNKSKGFIDLRKLEEILSSIGFRSPSDYDREISKLEAEAQNQAGTGGLMVVSNINNLLCVVSHAKSMFFEDGESKKDERNCKKLSEFLYVKIHDNPVILSSGHTYDRNSIAKWINSGHHTCPKSGQRLIHTALIPNFALKSLIQQWCQENKVPVNDPTSLLSEGNNSKKNLNENAVDQVSTNQGSTDSVKMTAEFLVGKLATGSADIQMKAAYELRLLAKSGMNNRRIIAEAGAIPFLVTLLGSNDSRIQENAVTALLNLSIFDNNKILIMAAGAVENIIGVLESGKSMEARENAAAAIFSLSMVDECKVTIGTHPRAIPALIGLLKEGTATGKRDAATALFNLAVYKHNKCLLCFWVALKV* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0376 532 Pfam Armadillo/beta-catenin-like repeat 395 431 IPR000225 GO:0005515
Lja6g0376 532 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 1 11 522 - -
Lja6g0376 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 403 445 IPR000225 GO:0005515
Lja6g0376 532 Pfam U-box domain 261 321 IPR003613 GO:0004842|GO:0016567
Lja6g0376 532 SMART arm_5 392 432 IPR000225 GO:0005515
Lja6g0376 532 SMART arm_5 475 516 IPR000225 GO:0005515
Lja6g0376 532 SMART arm_5 433 474 IPR000225 GO:0005515
Lja6g0376 532 Gene3D - 329 526 IPR011989 -
Lja6g0376 532 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 325 IPR013083 -
Lja6g0376 532 SUPERFAMILY RING/U-box 261 326 - -
Lja6g0376 532 CDD RING-Ubox_PUB 265 296 IPR045210 -
Lja6g0376 532 PANTHER U BOX DOMAIN-CONTAINING 11 522 - -
Lja6g0376 532 SUPERFAMILY ARM repeat 362 520 IPR016024 -
Lja6g0376 532 ProSiteProfiles U-box domain profile. 265 323 IPR003613 GO:0004842|GO:0016567
Lja6g0376 532 SMART Ubox_2 256 316 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0376 Lja-Chr6 9473439 9475203 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0376 10 520 U-box Gene Family AT5G01830 34.733 1.11e-90 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0376 - - gmx:100793498 742.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0376 6 9473439 9475203 Lja6g0376 6 9473439 9475203 ECH