Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0367 ATGGATAATCAAGAGATGGCTATAGAGAAAGGCTTTGCAGACATGCGAACAAGGTCAAAGATAGCTACTTTTGCAGACATGCGAATAAGGTCAAGGAAAGCTACTTTATCTGATTGCACATCCTTCTTACGATGTGGGATTGATGTGTGTGTTCTATCAGCCTTTAAAAGTAGTGATGATCCAAATGAATCAAATTCTAATCCAACTCTGTGTAAGGATGTTCAAGTAGTTGGGTTAAATCAAATTTCCATCCTTCAAAGGCTTGGATGTAAAAGCCTTGAAGATCAATTATTCCGTTGGGACTCGTCAGAAGACTGCATCGACAAACCACCAACAAGACGCAGTGCCTTAGATGCAGATGCATACAAGAAAATGATAGACTCTTACTTTAAAGAGATGGATAAATTACCAGCAACGAAAGAGGTTCCTATTAATGAACAATGGAATGAAGCAATCAACTTTGGAAAAGACAAGGAAACCAACAAAACTCAAAGAGAGGAGGAAGTGGAGGAAGAGGTTTCTGAAATCGAAATGTTATGGAAAGAAATGGATGATGCAATGATAGAGAGTTTTCTTCAAGAACAAACAGAGGTAGAGGATTCGAGTGCTCCAACTAAGGAAGAGACTACCAGAACTTGTGAGCACGATTATAGATTGGACGAGCAACTTGGAATCTATTGCCATAGATGTGGCTTTGTGAAAGAGGAGATAAGATATATCATGCCATCCTTTGCAGAGCGACGATCACGACGACACAAGGATAGGAAATTCAATGATGAAGAACCAAATTCAAAGGCTGATGATGAACCAAATTCTAATGATCAACAAAATGTTTATGAGGAGCCAAAGGGTGATGAAAACGTTTGGGGATTCATTCCTGAACTTAGAGAAAAAATGCTCCCCCACCAAAAGAAAGCTTTTGAGTTTCTTTGGGGAAACATTGCAGGGTCCATGAAACCAGCACTTATGGAAGCACAATCTGAAAACAATGGAGGTTGTGTTATATCTCATGCTCCTGGAGCTGGAAAAACATTCCTCACAATAGCATTTCTTGTTAGCTATTTGAAGGTATTCCCAAACAAGAAACCCTTAATCCTTGCTCCAAAAACCACACTTTACACTTGGTACCAAGAGTTTATCAAGTGGAAGTTTCCAATGCCAGTGTATCTGATTCATAGTCGCAGAAGCCAAAGAAGTTTCAGTGAAACATCATTAGCTCTACCTGGACTTCCAAACCTAAATGGGGATGCCAAGCACACTTTGGATTGCTTGGAAAAGATTAAAAAGTGGCATGCACACACTAGTGTTTTAGTCATGGGTTACACTTCCTTTTTATCATTAATAAATGAGGGCTCAAAGTATGAACATAGAAGGTATATGGCTAAAGCATTGAGGGAAATCCCTGAGATTCTCATGCTGGATGAAGGGCACGATCCGAGAAGTACAAAATCAAATTTGAGGAAAGGATTAATGAAAGTGAAGACAGAACTGAGAATACTCCTCTCTGGAACATTGTTTCAGAATAATTTTGGTGAGTATTTTAACACACTTTGTTTGGAAAGGCCAAGGTTTGTTCATGAAGTGCTGCAAGAGTTAGACCCAAAATATGTGAAGAGTGAAGCAGAAAAAAAGGCTCCTCATTTAGTCGAGTCGTGGGCTAGGAAATTCTTCATGGATAAAATTGCGATGAAAATCGATGCATGTAATGAAAACGTTGAGGAGAAGATGCTGGGTCTAAATATGCTGAAGAACATAACAAGTGGTTTCATTGATGTTTATGATAACACAAATACAGATAGTTTACTACCTGGTCTACAAATTTACACCTTGCTGATGAATAACACTAAGAAGCAAAGTGAGATCTTGCAGACACTGCAGAAGAAAATGAACCAGAGCGGTGGGTACCCTCTTGAGGTAGGGTTTTTGATTACCCTTGTGTCAATACATCCATGGTTGATCTCAACAACCAAATGTGCCAAAAAGTTTTTCACTTCAAGCCAATTGAAGCAGCTAGAGAAATGCAAGATTGATATGAAAATAGGGTCAAAGGTGAAATTTGTTATGAGCCTTGTCTTCCGTGTGGTCAAGATGAAGGAGAAGGTTCTTATCTTTTGTCATAACCTTTCACCAATGTGGCTGCTTCTAGAGTTGTTTGAGAGGTACTTCAAGTGGAAATTGGGAATAGAGATCTTGACACTTCATGGAGAACAAGAGTTGTTTGAGCGTGGGAAAGTAATAGATAAGTTTGAGGATCGTCGTGGAGCCTCAAAGGTGCTCCTAGCTTCAATCAACGCTTGTGCGGAAGGTATTAGTCTGACAGCGGCTTCTCGGGTGATTTTCATGGATTCAGAGTGGAATCCGTCCAAAACAAAGCAGGCTATTGCACGTGCTTTCCGTCCTGGTCAAGACAAGGTTGTTTATGAGGACAAATATAAGAAAACAAACTGGAAAGACTGGGTTTCGAGGATGATTTTCAATGATAATTTTGTGGAGGACCCTTCTAAATGGCAGGCACAGAAAATTGAAGATGATGTGCTAAGAGAAATGGATGAAGCAGACAAATCTAAATCAATCCACCAAATTATAAAGAATGGAAAGGCCTCAACAAACTTATAA 2616 0.3945 MDNQEMAIEKGFADMRTRSKIATFADMRIRSRKATLSDCTSFLRCGIDVCVLSAFKSSDDPNESNSNPTLCKDVQVVGLNQISILQRLGCKSLEDQLFRWDSSEDCIDKPPTRRSALDADAYKKMIDSYFKEMDKLPATKEVPINEQWNEAINFGKDKETNKTQREEEVEEEVSEIEMLWKEMDDAMIESFLQEQTEVEDSSAPTKEETTRTCEHDYRLDEQLGIYCHRCGFVKEEIRYIMPSFAERRSRRHKDRKFNDEEPNSKADDEPNSNDQQNVYEEPKGDENVWGFIPELREKMLPHQKKAFEFLWGNIAGSMKPALMEAQSENNGGCVISHAPGAGKTFLTIAFLVSYLKVFPNKKPLILAPKTTLYTWYQEFIKWKFPMPVYLIHSRRSQRSFSETSLALPGLPNLNGDAKHTLDCLEKIKKWHAHTSVLVMGYTSFLSLINEGSKYEHRRYMAKALREIPEILMLDEGHDPRSTKSNLRKGLMKVKTELRILLSGTLFQNNFGEYFNTLCLERPRFVHEVLQELDPKYVKSEAEKKAPHLVESWARKFFMDKIAMKIDACNENVEEKMLGLNMLKNITSGFIDVYDNTNTDSLLPGLQIYTLLMNNTKKQSEILQTLQKKMNQSGGYPLEVGFLITLVSIHPWLISTTKCAKKFFTSSQLKQLEKCKIDMKIGSKVKFVMSLVFRVVKMKEKVLIFCHNLSPMWLLLELFERYFKWKLGIEILTLHGEQELFERGKVIDKFEDRRGASKVLLASINACAEGISLTAASRVIFMDSEWNPSKTKQAIARAFRPGQDKVVYEDKYKKTNWKDWVSRMIFNDNFVEDPSKWQAQKIEDDVLREMDEADKSKSIHQIIKNGKASTNL* 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0367 871 Gene3D - 604 870 IPR027417 -
Lja6g0367 871 Pfam Helicase conserved C-terminal domain 685 800 IPR001650 -
Lja6g0367 871 Pfam SNF2-related domain 313 521 IPR000330 GO:0005524|GO:0140658
Lja6g0367 871 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 61 108 IPR044567 GO:0080188
Lja6g0367 871 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 17 73 IPR044567 GO:0080188
Lja6g0367 871 MobiDBLite consensus disorder prediction 250 283 - -
Lja6g0367 871 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 61 108 - -
Lja6g0367 871 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 112 868 - -
Lja6g0367 871 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 689 842 IPR001650 -
Lja6g0367 871 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 324 523 IPR014001 -
Lja6g0367 871 SMART helicmild6 716 801 IPR001650 -
Lja6g0367 871 MobiDBLite consensus disorder prediction 250 268 - -
Lja6g0367 871 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 112 868 IPR044567 GO:0080188
Lja6g0367 871 SMART ultradead3 295 531 IPR014001 -
Lja6g0367 871 CDD SF2_C_SNF 675 807 - -
Lja6g0367 871 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 17 73 - -
Lja6g0367 871 Gene3D - 267 556 IPR038718 -
Lja6g0367 871 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 600 842 IPR027417 -
Lja6g0367 871 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 288 525 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0367 Lja-Chr6 9393153 9397561 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0367 699 840 RAD5 or RAD16-like Gene Family AT5G43530 33.099 1.49e-09 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja6g0367 SNF2_N 2.4e-15 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0367 K10875 - gmx:100785036 921.768