Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0366 ATGATTGAGAGCTGGAAATTCAGCTGCTTCAGGGATCTTCGGTTTGGAATTCTGAGGGTTCTATCGTTGTGTTTGTTGTTTCAGAGCTTCGGTTTGTGCTGTTCTTTGAACGAAGAAGGTAAAGCTCTTTTGAAGTTGAAGCAGGGAATAGTGAGTGACCCTTTTGGTGCTTTGACGAATTGGATTGATGATGAAGTTGTGGTTGACGCGTGTAATTGGTTTGGAGTTGAGTGTTCAGATGGAAGAAGAGTGGTGGAATTGAATTTGAAAGATCTTTGTCTTGAAGGAAATCTGGCGCCTGAGCTCGCGAATCTTATTCACATAAAGTCCATAATTTTGCGGAACAATTCTTTTCACGGGGTCATCCCTGAAGGAATTGCACACTTGAATGAATTGGAAGTTTTGGATTTGGGCTACAACAACTTCAGTGGACCTCCACCGACCGATCTTGAGACTAATATTTCGCTAACAATCCTTTTGCTGGACAACAATGATCTTCTTTGTGGTTTTTCTCCTGCAATTAATGAATTGAAGATGCTTTCTGAATCTCAAGTAGATGAAAACCAGCTAATTGGTGCAGGAAAAATGTCAGGCTGTACAAGAAGACGCATCATACGGCATGTTGGCCTAAATGAAAAAGGTCTCCGGAACCTACTGCAAGAAGATCCTCATAATCTTCCAGCTGTTGGTCCCAATAGTCCTGCTCTGTCTCCGTCTCCATCTCCATCTCCATCTCTGTCTCCATCTCCATCTCCGTCTCCTTCACCTTCCCCATCTGCCCCAGCAACACCACCGATAGCACTGAAACCACCTTCCCCTTCTCCTCGTCGAAATGATTCTTCTCCTTCTCCCCAAACTAATAGTACCTCATCAAAGAATCATCATGTTCCTATTTTGGCTGGTTCTGCGGGTGTTGCTGCATTTCTTCTCATTTCACTCACGGGCATTTATCTCTGTAAAACAAACAAGGTAACCACCGTAAAGCCATGGGTTACAGGATTAAGTGGACAGCTTCAGAAGGCATTTGTGACAGGTGTGCCAAAGCTAAAGAGGTCAGAGCTTGAAGCAGCATGTGAAGATTTTAGTAATGTAATTGGTACTTCACCCATTGGTACAGTGTACAAAGGGACTTTATCTAGCGGTGTTGAAATAGCTGTGGCCTCTGTTGCAGTGACATCATCCAAAGATTGGCCAAATAGTTCAGAAGCCCAATTTCGGAACAAGATAGATACATTATCCAAAGTGAACCACAAGAATTTTGTAAATCTTCTTGGATTTTGTGAAGAAGATGAGCCTTTCACCAGAGTGCTGGTTTTTGAATATGCCCCTAATGGAACACTCTTTGAGCATTTACACATAAAAGAAGCTGAGCACTTAGATTGGGGAACAAGACTCAGAGTTGCCATGGGCGTGGCTTACTGCCTGCAACATATGCACCAGTTGGACCCTCCTTTGCCCCATAGCAACCTTAATTCTTCAGCTATCCAACTCACTGATGATTATGCTGCAAAAATCTCGGATTTGAGTATTTTGAATGAAATAGTTTCAGCTAAAACAAAATCTGGTTCTAGAAAACACAGCGACATGACATTGGCAAGCAATGTTTACAGCTTTGGTGTTGTATTATTCGAAATGGTAACAGGCAAGCTCCCTTATTCAGTGGAGAATAGTGGGTCACTTAATGACTGGGCTTCACACTTTTTACATGGCGACCGGCCCCTCAAAGAAATAACGGATCCAACTCTAGTGTCTTTCCAAGAAGAACAGCTAGATCAAGTTTCTGAATTGATTCAATCTTGTGTGAATCCTGATCCAGAGCAGAGACCAACAATGAAAGAAGTTAGCTTGAGATTAAGAGAGATAACAAAAATCAGGCCTGAAGCAGCAGTTCCGAAGCTTTCTCCACTTTGGTGGGCAGAGCTTGAGATTTCTTCTTTTGATGCAAGCTGA 1950 0.4267 MIESWKFSCFRDLRFGILRVLSLCLLFQSFGLCCSLNEEGKALLKLKQGIVSDPFGALTNWIDDEVVVDACNWFGVECSDGRRVVELNLKDLCLEGNLAPELANLIHIKSIILRNNSFHGVIPEGIAHLNELEVLDLGYNNFSGPPPTDLETNISLTILLLDNNDLLCGFSPAINELKMLSESQVDENQLIGAGKMSGCTRRRIIRHVGLNEKGLRNLLQEDPHNLPAVGPNSPALSPSPSPSPSLSPSPSPSPSPSPSAPATPPIALKPPSPSPRRNDSSPSPQTNSTSSKNHHVPILAGSAGVAAFLLISLTGIYLCKTNKVTTVKPWVTGLSGQLQKAFVTGVPKLKRSELEAACEDFSNVIGTSPIGTVYKGTLSSGVEIAVASVAVTSSKDWPNSSEAQFRNKIDTLSKVNHKNFVNLLGFCEEDEPFTRVLVFEYAPNGTLFEHLHIKEAEHLDWGTRLRVAMGVAYCLQHMHQLDPPLPHSNLNSSAIQLTDDYAAKISDLSILNEIVSAKTKSGSRKHSDMTLASNVYSFGVVLFEMVTGKLPYSVENSGSLNDWASHFLHGDRPLKEITDPTLVSFQEEQLDQVSELIQSCVNPDPEQRPTMKEVSLRLREITKIRPEAAVPKLSPLWWAELEISSFDAS* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0366 649 Pfam Protein tyrosine and serine/threonine kinase 362 615 IPR001245 GO:0004672|GO:0006468
Lja6g0366 649 ProSiteProfiles Protein kinase domain profile. 359 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0366 649 PANTHER BNAA09G55080D PROTEIN 2 649 - -
Lja6g0366 649 SUPERFAMILY Protein kinase-like (PK-like) 343 617 IPR011009 -
Lja6g0366 649 MobiDBLite consensus disorder prediction 222 295 - -
Lja6g0366 649 Pfam Leucine rich repeat N-terminal domain 37 79 IPR013210 -
Lja6g0366 649 MobiDBLite consensus disorder prediction 233 278 - -
Lja6g0366 649 SUPERFAMILY L domain-like 39 204 - -
Lja6g0366 649 PANTHER PROTEIN MALE DISCOVERER 2 2 649 - -
Lja6g0366 649 Gene3D Phosphorylase Kinase; domain 1 332 441 - -
Lja6g0366 649 Gene3D Transferase(Phosphotransferase) domain 1 442 630 - -
Lja6g0366 649 MobiDBLite consensus disorder prediction 279 295 - -
Lja6g0366 649 Gene3D Ribonuclease Inhibitor 34 216 IPR032675 -
Lja6g0366 649 Pfam Leucine rich repeat 107 166 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0366 Lja-Chr6 9385113 9389508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0366 1 620 Receptor kinase-like Gene Family AT5G16000 26.698 5.23e-48 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Lja6g0366 PK_Tyr_Ser-Thr 5.5e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0366 - - gmx:100784541 902.894
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0366 6 9385113 9389508 Lja6g0366 6 9385113 9389508 ECH
Lja6g1075 6 26115722 26124902 Lja6g0366 6 9385113 9389508 ECH
Lja6g0366 6 9385113 9389508 Lja6g0366 6 9385113 9389508 PCT