Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0359 ATGGGTGGGAGTGGGAATTCCCCATGTGCTTCATGCAAGCTGCTGAGACGCCGTTGCGCCCAAGATTGCATCTTTTCTCCTTATTTCCCTTCTGATGATCCTCAAAAGTTCGCCATAGTTCATAAGGTTTTTGGTGCTAGCAATGTTAGCAAAATGCTGCAGGAACTTCCGTTTGATCAGAGAGCAGATGCAGTGAGCAGTCTAGTGTATGAAGCACATGCAAGAGTCCGGGACCCAGTGTATGGTTGTGTTGGAGCCATATCCTACTTGCAAAACCAGGTCTCTGAGCTCCAAATGCAGCTTGCAGTGGCTCAAGCAGAGATCCTCTGCATCCAGATGCAGAACGAGCCTGTTATGCCCAATCCAGAACTGGACCTAGATCAGAAATCATACCTTCTCCAAAATGATCTGCCTCAGTACCTTAATTATACCTCTTCAAGCAATGTTATTCATCATGATTCTCTCTCAAGAGAGAGCATATTTGGACATGACATGGTTTCTTGA 504 0.4583 MGGSGNSPCASCKLLRRRCAQDCIFSPYFPSDDPQKFAIVHKVFGASNVSKMLQELPFDQRADAVSSLVYEAHARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMQNEPVMPNPELDLDQKSYLLQNDLPQYLNYTSSSNVIHHDSLSRESIFGHDMVS* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0359 167 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Lja6g0359 167 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 5 160 - -
Lja6g0359 167 Coils Coil 87 107 - -
Lja6g0359 167 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 160 - -
Lja6g0359 167 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0359 Lja-Chr6 9115065 9117259 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0359 1 133 AS2 family AT2G30130 81.752 7.09e-78 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lja6g0359 LOB 1e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0359 6 9115065 9117259 Lja6g0359 6 9115065 9117259 ECH
Lja6g1042 6 24554613 24555903 Lja6g0359 6 9115065 9117259 ECH
Lja6g0359 6 9115065 9117259 Lja6g0359 6 9115065 9117259 PCT