Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0357 ATGGATTCTTCCGAGTTCCCAAACAAAGCGTTAACCAGCACGCGTTTCTCCGAGCTGAACCCGCCACTATCTGAGCCGGTTCTCCAAGCCCTAACAGACTCCGGGTTCGACTTCTGCACCCCTGTTCAAGCCGCCACGATTCCTTTGCTATGCAGCTTCAAGGACGTCGCCGTCGACGCCGCCACCGGTTCCGGCAAAACCCTAGCTTTTGTCCTCCCTCTTGTTGAGATTCTTCGCCGCTCTTCCCCTAAACCCAAGCCTCACCAGGTACTAGGAATAATTATATCTCCTACAAGGGAGCTATCATCCCAGATATATCATGTTGCACAACCTTTCATTTCAACTTTAGTGAATATTAAGTCCATGCTCCTCGTTGGTGGAGTGGATGTAAAAGCAGACATGAAGAAAATTGAGGAAGAAGGAGTGAACATATTGATCGGCACACCTGGGCGGTTACATGACATTATGAATCGGATGGATATCTTGGATTTTAAAGAACTTGAGATATTGATTTTGGATGAGGCTGATAGACTCTTAGATATGGGATTTCAGAAGCAGTTAACTTCCATTATAACTCAGTTGCCCAAGCTTCGTAGAACTGGTTTGTTCTCTGCTACTCAAACTGAGGCTGTAGAAGAGCTTGCTAAAGCAGGATTGAGGAACCCTGTGCGGGTTGAAGTTCGAGCAGAAACTAAAAGAGCAAATGATCCTGCAACAGCAAAACAACTAGAATCTTCCAAGACACCTTCAGGTCTTCACATTGAGTACTTGGAGTGTGAGGCAGATAAGAAGCCATCACAGCTAGTAGATTTCCTTGTTAAGAACCGCTCTAAAAAAATTATAATATATTTCATGACTTGTGCTTGCGTTGACTTTTGGGGAACTGTCCTTCCTCACATTTCTGTTTTAAAAGGCTTCTCATTGATCCCTCTTCATGGAAAGATGAAGCAGACTGTCAGGGAGAAAGCACTTGCTTCATTTACATCCCTTTCAAATGGAATTCTTCTATGTACCGATGTTGCAGCACGTGGACTTGACATACCAGGTGTAGATTGTATAGTGCAGTACGATCCTCCTCAAGATCCAAATGTTTTCATACATAGAGTTGGTCGAACAGCTCGGCTGGGTAAACAAGGTCATGCTGTTGTCTTCTTATTACCAAAGGAGGATTCTTACGTAGAATTCCTTCGTATACGAAGAGTTCCTCTTCAAGAGATTAGATGCTCTGATGATGCGCCTGATGTTGTTCCTCAGATTCGTTCTGCTGCAAAAAAGGATCGTGATATCATGGAGAAGGGTGTTAAAGCATTTGTTTCTTACATCCGTGCTTATAAAGAGCATCACTGCTCTTATATTTTTAGGTGGAGAGAACTTGAAATTGGGAAATTGGCTATGGGACATGGTTTACTGAGACTTCCTTTAGTGCCAGAGGTAAAACAAAACTCTCTTTCCACCAAGGGATTTGAACCAGTTGAAGATATCAATTTTGAGGACATTAAGTACAGGGATAAATCGAGAGAGAAACAACGGAAGAAGAACCTGCAAGTAAAGAAGGAAGCTAAGGAGAAAGAGCCAAGACCTAAAAAACTAAGCAAAACCCCAAATGCACAAACTGACATGAAGAAGAAAACAGCCAAGCAGAGACGTGCTGAGCAGGACGTTGAAGACGAGGAAGAGTTGATGCATGAATACCGATTGTTGAAGAAATTGAAGAAAGGGACCATAGATGAAAATGAATACGCCAAATTGACAGGCACTGAGGAATTACTTTGA 1773 0.4298 MDSSEFPNKALTSTRFSELNPPLSEPVLQALTDSGFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVLPLVEILRRSSPKPKPHQVLGIIISPTRELSSQIYHVAQPFISTLVNIKSMLLVGGVDVKADMKKIEEEGVNILIGTPGRLHDIMNRMDILDFKELEILILDEADRLLDMGFQKQLTSIITQLPKLRRTGLFSATQTEAVEELAKAGLRNPVRVEVRAETKRANDPATAKQLESSKTPSGLHIEYLECEADKKPSQLVDFLVKNRSKKIIIYFMTCACVDFWGTVLPHISVLKGFSLIPLHGKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAVVFLLPKEDSYVEFLRIRRVPLQEIRCSDDAPDVVPQIRSAAKKDRDIMEKGVKAFVSYIRAYKEHHCSYIFRWRELEIGKLAMGHGLLRLPLVPEVKQNSLSTKGFEPVEDINFEDIKYRDKSREKQRKKNLQVKKEAKEKEPRPKKLSKTPNAQTDMKKKTAKQRRAEQDVEDEEELMHEYRLLKKLKKGTIDENEYAKLTGTEELL* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0357 590 CDD SF2_C_DEAD 255 385 - -
Lja6g0357 590 PANTHER RNA HELICASE 26 588 - -
Lja6g0357 590 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 395 IPR027417 -
Lja6g0357 590 Coils Coil 504 524 - -
Lja6g0357 590 Coils Coil 540 567 - -
Lja6g0357 590 SMART DUF4217_3 414 477 IPR025313 -
Lja6g0357 590 PANTHER ATP-DEPENDENT RNA HELICASE DDX55 26 588 - -
Lja6g0357 590 Pfam Domain of unknown function (DUF4217) 417 473 IPR025313 -
Lja6g0357 590 CDD DEADc_DDX55 27 225 - -
Lja6g0357 590 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 171 179 IPR000629 -
Lja6g0357 590 Gene3D - 255 474 IPR027417 -
Lja6g0357 590 SMART ultradead3 35 241 IPR014001 -
Lja6g0357 590 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 16 44 IPR014014 GO:0003724
Lja6g0357 590 SMART helicmild6 295 376 IPR001650 -
Lja6g0357 590 Pfam Helicase conserved C-terminal domain 264 376 IPR001650 -
Lja6g0357 590 MobiDBLite consensus disorder prediction 505 559 - -
Lja6g0357 590 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 267 423 IPR001650 -
Lja6g0357 590 Pfam DEAD/DEAH box helicase 40 214 IPR011545 GO:0003676|GO:0005524
Lja6g0357 590 Gene3D - 3 228 IPR027417 -
Lja6g0357 590 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 47 225 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0357 Lja-Chr6 9094363 9100220 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0357 14 385 Eukaryotic Initiation Factors Gene Family AT3G19760 28.686 6.93e-43 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0357 K14809 - gmx:100801482 1030.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0357 6 9094363 9100220 Lja6g0357 6 9094363 9100220 ECH