Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0342 ATGGAACTTGGTTTTAAGCACCAACTTGGTCTTATTTGTGTCATAATGCTATTTCCAGCACTGTGTAACGGCAAGGAATATTATAATAAATCCAGAGCAGCCTATTATGTCACCTCTGATGGCTATGGGAGTCCAAGAGGTGCTTGTGGCTTTGGAGACTATGGAAGAACAGTCAATGATGGCCATGTCACAGACTTGTCAGCTAGGCTATGGAACAATGGGGGTGGCTGCGGTGCATGTTATCAGGTCAGGTGCAAAATAGCACAATATTGTGATTACAATGGAGCATATGTAGTTGCAACTGACTATGGTGAAGGAGACAGAACAGACTTCACCTTGAGCCCACGCGCCTTCTCGAAATTGGGACGCGACAAAGTTGCATCTGAGGCGTTGAAGAAATACAGTGTGCTTGATGTTGAATACAAAAGGGTCCCCTGCACATTCAAGGGCAACACCATCGTGTTTCAGATCAATAAACAGTACAGCAGTAACCCTGGTTACTTTGCTATTGTGATTCTCTATGTAGGTGGAACATCTCATGTCACTTCTGTTGAGTTTTTGCGGAAAGAACACCACAAATGGGAGCCTCTACACAGGTCTTATGGTGCAATCTTTGACATAGCTAAACCACCAAGAGGTGAAATAAGATTGAAGTTCCAAGTGAGTGGCAGTGAAGGGCTTCATTGGGTGGAACCCAAGTTTGCAATCCCTGCAAACTGGAAGGCTGGAGCTACATATTCTACTAATTTATAG 753 0.4409 MELGFKHQLGLICVIMLFPALCNGKEYYNKSRAAYYVTSDGYGSPRGACGFGDYGRTVNDGHVTDLSARLWNNGGGCGACYQVRCKIAQYCDYNGAYVVATDYGEGDRTDFTLSPRAFSKLGRDKVASEALKKYSVLDVEYKRVPCTFKGNTIVFQINKQYSSNPGYFAIVILYVGGTSHVTSVEFLRKEHHKWEPLHRSYGAIFDIAKPPRGEIRLKFQVSGSEGLHWVEPKFAIPANWKAGATYSTNL* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0342 250 PANTHER EXPANSIN-B3 4 249 - -
Lja6g0342 250 Gene3D - 147 249 IPR036749 -
Lja6g0342 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 151 IPR007112 -
Lja6g0342 250 Pfam Lytic transglycolase 65 124 IPR009009 -
Lja6g0342 250 Gene3D - 20 146 IPR036908 -
Lja6g0342 250 SUPERFAMILY Barwin-like endoglucanases 26 151 IPR036908 -
Lja6g0342 250 PANTHER EXPANSIN-B1-LIKE PROTEIN 4 249 - -
Lja6g0342 250 SUPERFAMILY PHL pollen allergen 160 247 IPR036749 -
Lja6g0342 250 Pfam Expansin C-terminal domain 153 232 IPR007117 -
Lja6g0342 250 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Lja6g0342 250 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576
Lja6g0342 250 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Lja6g0342 250 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576
Lja6g0342 250 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Lja6g0342 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 248 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0342 Lja-Chr6 8765812 8767323 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0342 9 250 Expansin Gene Family AT4G17030 47.521 3.43e-83 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0342 - - gmx:100779487 341.273