Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0317 ATGGAGAAAAAGGGGAAGGTACTGATGGAGAAGTATGAGTTTGGGAGACTATTAGGCAAAGGAAACTTTGCAAAGGTGTACCATGCAAGGGACATTCGAACCGGTGACAATGTTGCAGTTAAGGTTATTGACAAGGAGAAAGTCCTAAAACTTGGGCTGATGGATCAGACGAAGCGCGAGATATCTATTATGAGACTGGTTAAACACCCAAATGTTTTGCAGCTTTATGAGGTCTTGGCCACCAAAACCAAGATTTACTTCATCATAGAATACGCAAAAGGGGGTGAGCTGTTCAACAAGATAGCGAAAGGTAGGCTCCATGAGAACATGGTGAGGAAGTACTTTCAACAATTGATCAGTGCTGTTGATTTTTGCCACAGGAAGGGTGTTTATCACAGGGATTTGAAGCCGGAAAACTTGCTCTTGGATGAGAATGGAATTCTCAAAGTAGCAGATTTTGGATTGAGCGCACTCGTTGAATCTCATAGCCGAGGAATCATGCTTCACACAATGTGTGGAACTCCTGCATATGTTGCTCCTGATGTTATATTATGCAAACAAGGGTATGATGGAGCAAAAGCTGATATATGGTCTTGTGGAGTGATCTTATTTGTCCTTTCGGCCGGTCATTTGCCATTCAATGATTTGAATATAATGGCACTGTATAAGAAAATAGGCAGGGCAGAATACAAATGTCCAAAATGGTTTTCATTTGAAGTGCGCCGGCTATTAGCGAGGATCCTTGACCCTAACCCGGATACTAGGATAACCATGGCAAAAGTTTTACGAAATTCATGGTTCAGAAAAGGATTAATTTCCAAATCTTTTCAAGTGATAGGAGAGGTTACCGATGCGGCTTCAGCTGATTCTGAAGAAGCTCTTGCCTTTTCTGAGAATGGAGGCGAGGCACATCAAGCATTGCTTAGGCCTACATCTTTAAATGCTTTTGATATAATTTCTCAATCCGTCGGGCTTGACTTGTCTGGCCTGTTTTCAAACAATGATGAAAACGACTTAGATGAGGATATCAAATTTACATCTACGAGCTCTGCCATGTCTATCATGTCAACAATGGAGGATATTGCGCACAACCTGAGTATGAAAGTAATGAAGAAGGATGGGGGGTTGCTGAAATTGGAGAGATCCAGAGAATTTAGAAAAGGGCCACTTTCCATTGAGGCTGAGATTTTTGAGTTCACTCCATCATTCCATTTAGTTGAGATAAAGAAATCATCTGGTGATACTCTAGAATACCAGAAGATATTGAAGGAGAATATAAGACCAGCTCTAAAAGACATTGTCTGGGTTTGGCAAGGTGAGGAGGAGCAAGAGATGTAG 1338 0.4148 MEKKGKVLMEKYEFGRLLGKGNFAKVYHARDIRTGDNVAVKVIDKEKVLKLGLMDQTKREISIMRLVKHPNVLQLYEVLATKTKIYFIIEYAKGGELFNKIAKGRLHENMVRKYFQQLISAVDFCHRKGVYHRDLKPENLLLDENGILKVADFGLSALVESHSRGIMLHTMCGTPAYVAPDVILCKQGYDGAKADIWSCGVILFVLSAGHLPFNDLNIMALYKKIGRAEYKCPKWFSFEVRRLLARILDPNPDTRITMAKVLRNSWFRKGLISKSFQVIGEVTDAASADSEEALAFSENGGEAHQALLRPTSLNAFDIISQSVGLDLSGLFSNNDENDLDEDIKFTSTSSAMSIMSTMEDIAHNLSMKVMKKDGGLLKLERSREFRKGPLSIEAEIFEFTPSFHLVEIKKSSGDTLEYQKILKENIRPALKDIVWVWQGEEEQEM* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0317 445 SMART serkin_6 12 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0317 445 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 2 441 - -
Lja6g0317 445 ProSiteProfiles NAF domain profile. 308 332 IPR018451 GO:0007165
Lja6g0317 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Lja6g0317 445 CDD CIPK_C 314 431 - -
Lja6g0317 445 Gene3D Transferase(Phosphotransferase) domain 1 3 313 - -
Lja6g0317 445 Pfam NAF domain 310 371 IPR004041 GO:0007165
Lja6g0317 445 PANTHER - 2 441 - -
Lja6g0317 445 Pfam Protein kinase domain 12 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0317 445 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Lja6g0317 445 ProSiteProfiles Protein kinase domain profile. 12 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0317 445 Gene3D Kinase associated domain 1, KA1 314 436 - -
Lja6g0317 445 SUPERFAMILY Protein kinase-like (PK-like) 4 274 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0317 Lja-Chr6 7931590 7933826 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0317 1 443 CBL-interacting serine-threonine protein kinases AT5G58380 56.550 0.0 544
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lja6g0317 Pkinase 3.9e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0317 K07198 - gmx:100816254 668.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0317 6 7931590 7933826 Lja6g0317 6 7931590 7933826 ECH
Lja6g0317 6 7931590 7933826 Lja1g3278 1 40595047 40598731 ECH
Lja6g0991 6 22122450 22125025 Lja6g0317 6 7931590 7933826 ECH
Lja1g3278 1 40595047 40598731 Lja6g0317 6 7931590 7933826 ECH