Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0309 ATGAATTCACCATCCGCGCAGTTTGTTTCCTCGAGAAGGATGAGCGTTTACGATCCGATCCACCAGATTAGTATGTGGGGAGAAAGCTTCAAAAGTAATGGTAATTTAAGTGCACAAATCCCCTTAATTGATGAGGCAGACATGAAGTTTGATAGTCAGTCAGAGGATGCTTCTTTTGATATACTGGGAACATCTAACAACTATGAACAAGAAGCTAACAGACCTATTGATAAGATACAAAGACGTCTCGCACAAAATCGAGAGGCTGCTCGTAAGAGCCGTCTGCGGAAAAAGGCCTATGTTCAGCAGCTAGAATCAAGTCGTTTGAAATTGATGCAGTTGGAGCAAGAGCTTGATCGTGCAAGACATCAGGGAATGTATATAGGTGGTGGTGGATTGGATTCTAATAACATGGGTTTTGCAGGATGTGCAAATTCAGGAATTACAACCTTTGAGATGGAGTATGGAAATTGGGTGGAGGAACAAAGTAGGCGAATCACAGAAATGAGAGGTGCTTTAAATGCTCATATTGGTGACATGGAGCTTAGGATTCTGGTAGATGGCATGATGAACCACTATGCCGAAATCTTCCGCATGAAATCCGCTGCTGCAAAAGCAGATGTTTTCTATGTAATGTCTGGTATGTGGAAAACAACAGCCGAAAGATTTTTCTTGTGGATTGGAGGCTTTCGCCCCTCCGAGCTTCTAAAGGTTCTTGCCCCTATGATTGAACCCTTGACCGAGCAACAACGGTTGGATATTGAGAACCTTGGACAATCATGTCAACAAGCAGAGGATGCCCTGTCACAAGGTATGGTTAAACTCCGGCAAACGCTAGCCGATAGTGTAGCGGCTGGACAATATGTTGAAGTTCCGCAGATGACTTCTGCCTTGGAGAAGTTGGAAGCTCTTGTGAGCTTTGTCAACCAGGCTGATCATCTTCGGCAAGAAACCTTGCTGCAATTGTCGCGAATACTTACAATCCGCCAATCAGCTCGATGCTTACTTGCTTTGGGAGAATATTTCCAACGCCTGAGGGCTTTAAGCTCACTATGGTCGAATCGACCCCGTGAACCTGCTTAG 1083 0.4469 MNSPSAQFVSSRRMSVYDPIHQISMWGESFKSNGNLSAQIPLIDEADMKFDSQSEDASFDILGTSNNYEQEANRPIDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLMQLEQELDRARHQGMYIGGGGLDSNNMGFAGCANSGITTFEMEYGNWVEEQSRRITEMRGALNAHIGDMELRILVDGMMNHYAEIFRMKSAAAKADVFYVMSGMWKTTAERFFLWIGGFRPSELLKVLAPMIEPLTEQQRLDIENLGQSCQQAEDALSQGMVKLRQTLADSVAAGQYVEVPQMTSALEKLEALVSFVNQADHLRQETLLQLSRILTIRQSARCLLALGEYFQRLRALSSLWSNRPREPA* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0309 360 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 118 IPR004827 GO:0003700|GO:0006355
Lja6g0309 360 Pfam Seed dormancy control 166 240 IPR025422 GO:0006351|GO:0043565
Lja6g0309 360 PANTHER TRANSCRIPTION FACTOR TGA9 1 359 - -
Lja6g0309 360 Coils Coil 97 124 - -
Lja6g0309 360 SMART brlzneu 74 139 IPR004827 GO:0003700|GO:0006355
Lja6g0309 360 Pfam bZIP transcription factor 78 110 IPR004827 GO:0003700|GO:0006355
Lja6g0309 360 ProSiteProfiles DOG1 domain profile. 148 355 IPR025422 GO:0006351|GO:0043565
Lja6g0309 360 Gene3D - 77 126 - -
Lja6g0309 360 SUPERFAMILY Leucine zipper domain 78 117 IPR046347 GO:0003700|GO:0006355
Lja6g0309 360 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700|GO:0006355
Lja6g0309 360 PANTHER TRANSCRIPTION FACTOR TGA1 1 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0309 Lja-Chr6 7773400 7778498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0309 1 360 Calmodulin-binding Proteins AT5G65210 65.854 9.92e-173 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lja6g0309 DOG1 7.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0309 K14431 - gmx:100793353 620.157