Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0308 ATGGCTGATCATTCAGATTCTTCTCCTCTCGTCCCTCCCCAACCACTCTCTGACGCTTTCGAGATCGACCTCGAAGCTGGTCCCTCTGAACAAATCCAATGCCGGATTTGTCTTGAAACTGATGGTCGAGATTTTATAGCTCCATGTAAGTGCAAAGGCACATCAAAATATGTACATCGGGATTGTTTGGATCACTGGCGAGCTATTAAGGAAGGGTTTGCATTTGCTCACTGCACTACCTGCAAGGCTCCTTATCATTTGCGTGTTCATGTTGCTGCTGATAGGAAATGGCGTACCCTGAAATTTCGGTTTTTTGTCACCAGAGACATTTTGTTTATTTTCCTGGCTGTCCAGCTTATCATCGCCTCTCTGGCATATTTGGTTTATCTAATAGATGGTTACCAGCAGTATTGGCTTCGTCTTCTATGGGGTTTTGATAGTGAACTGAGTTTTTATTACATATGTGGAGCTCTCTTGTTTTTCGCCTTGCTTGGCCTTTCTGGGTGCTTCATTACTTGTTATGATCGAAGGGTTCGCAGTGATTTGGCTCAACCTTGTAGAGAATTATGTCTTTGTTGTTGTCAACCTGGAGTTTGTGCAGACTGTCATTTGCCCGGCACTCTCTGTATGTGGACTGATTGCACCACATGCTTTGAGAGTTGTGGAACCATGGCAACAGAATGTGGTGGTTGTTTGGGAGGTGCTGGGGAAGCAGGGCTACCATTATTATTTATAATGGCTTTGATTGTTCTGGGACTATTTACTGTAATTGGGATATTTTACAGCGTATTGGTGGCTACTATGGTTGGTCAACGCATATGGCAACGCCACTATCACATACTTGCAAAACGGATGTTAACCAAGGAGTATGTGGTTGAAGATGTTGATGGAGAGATGACAGACTCTGATTGGTCTCCCCCTGTCCTTCCACCTGAGCATGTTCAGCAATTGAAAACATTGGGTCTACTATGA 972 0.4414 MADHSDSSPLVPPQPLSDAFEIDLEAGPSEQIQCRICLETDGRDFIAPCKCKGTSKYVHRDCLDHWRAIKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFFVTRDILFIFLAVQLIIASLAYLVYLIDGYQQYWLRLLWGFDSELSFYYICGALLFFALLGLSGCFITCYDRRVRSDLAQPCRELCLCCCQPGVCADCHLPGTLCMWTDCTTCFESCGTMATECGGCLGGAGEAGLPLLFIMALIVLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTDSDWSPPVLPPEHVQQLKTLGLL* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0308 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 96 IPR013083 -
Lja6g0308 323 SMART ringv_2 33 82 IPR011016 GO:0008270
Lja6g0308 323 PANTHER BNAA04G12620D PROTEIN 1 323 - -
Lja6g0308 323 SUPERFAMILY RING/U-box 29 86 - -
Lja6g0308 323 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 323 - -
Lja6g0308 323 CDD RING_CH-C4HC3_MARCH 34 82 - -
Lja6g0308 323 Pfam RING-variant domain 34 81 IPR011016 GO:0008270
Lja6g0308 323 ProSiteProfiles Zinc finger RING-CH-type profile. 26 88 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0308 Lja-Chr6 7725852 7730878 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0308 1 323 C3H Transcription Factor Family AT2G22120 85.185 0.0 558
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0308 - - gmx:100791777 647.121