Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0305 ATGTATTATTCACGAGCAGCAGCCATGAAAGCTCTCACAAAGCTCTTCCAGCAACTTTGCAGCAAAATAATAATCCTATTGACACTCCTGCTAGTAGAGCTCATCGTCCTCCTTTGGAGACTAACATCAGAAAAACGGTCAATCACCACGAAGCAGTACCTTGAGTTCATCGAAGAGAACAACCCCACGATTCGCTACGCGAAAAGGCGGTCGTCATGGTCAGAGCTGGAGCATGTTGTGCCGGATGATACGGAGTGCAGGGTGTGCTTGTCCGAATTCGAGGAAGGAGAGAAGGTGAGGAGGTTGAAATGCAAGCACACTTTTCACAAAGATTGCTTGGACAAGTGGTTGCAGGAATGTTGGGCAACATGCCCGCTTTGCAGGAAACAAGTGTTGCCGTGTGATGTCGTATCCAAACATCGTCATTTCCTAAGTCACGAAGAGAATGTGGAGCATCTTCCATATCTGTTATTCGTGTGGCGTGGTGGTAATGGAAGTAACTTCCGTAGATATGTGTGA 519 0.4701 MYYSRAAAMKALTKLFQQLCSKIIILLTLLLVELIVLLWRLTSEKRSITTKQYLEFIEENNPTIRYAKRRSSWSELEHVVPDDTECRVCLSEFEEGEKVRRLKCKHTFHKDCLDKWLQECWATCPLCRKQVLPCDVVSKHRHFLSHEENVEHLPYLLFVWRGGNGSNFRRYV* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0305 172 Pfam Ring finger domain 85 128 IPR001841 -
Lja6g0305 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 134 IPR013083 -
Lja6g0305 172 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 9 164 - -
Lja6g0305 172 ProSiteProfiles Zinc finger RING-type profile. 86 128 IPR001841 -
Lja6g0305 172 SMART ring_2 86 127 IPR001841 -
Lja6g0305 172 CDD mRING-H2-C3H2C2D_ZSWM2 85 128 - -
Lja6g0305 172 PANTHER - 9 164 - -
Lja6g0305 172 SUPERFAMILY RING/U-box 75 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0305 Lja-Chr6 7584038 7585197 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0305 84 139 C3H Transcription Factor Family AT1G15100 53.571 3.42e-16 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0305 K16282 - gmx:102661897 171.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0686 4 5648919 5649817 Lja6g0305 6 7584038 7585197 PCT