Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0298 ATGGCCACCGCACTGACTTGGAGGTTTGCTGCCAGCAATGGCAGCAGCAGTCTTCCTGCTAATGATTTGGAAAAAAATGGTGACGGGAAGGCTCAAGATTCAGAGCCTCCAATTCCCTATCCTGTTCTGAAGATGGAATTGAGAGAACGTAGCAGCAACAGCATGGAAGATCCAGATGGAACATTAGCAAGTGTAGCTCAGTGCATTGAGAAGCTGCGCCAAAGCTCATCTTCTATGCAAGAGAAAGAGTATTTCTTGAAGCAGTTATTGGAGCTTATTGATATGCGTGAAAATGCTTTCAGTGCTGTTGGATCTCACTCTCAGGCAGTTCCAGTACTTGTTTCCCTCCTCCGGTCAGGTTCGTTGAATGTAAAGATACAGGCAGCAACTGTCTTGGGCTCTCTTTGTAAAGAAAATGAACTGAGGGTGAAAGTCTTGCTGGGAGGATGCATTCCTCCTTTGCTTGGTCTACTCAAGTCCAGTTCTGCTGAAGGTCAAGTAGCTGCTGCAAAGACAATTTTTGCTGTCTCTCAAGGTGGTGCCAAAGATCATGTTGGATCAAAAATATTTTCAACTGAAGGAGTTGTCCCAGTGCTTTGGGAGAAGCTGCAAAAGGGCGTGCAGAATGACAGTGTAGTCGATAGTTTATTAACTGGAGCACTGAAAAATCTCTCCAGCAGTACTGAGAGATTTTGGAATGCCACACTACAGGCTGGTGGAGCTGATATATTAGTGAAGTTACTAACAACAGGACAGTCTAGCACTTTAGCTAATGTGTGCTTCTTACTTGCCTGTATGATGATGGAGGATGCATCTGTTTGTTCAAAGGTGTTGACAGCAGAGGCAACGAAACAACTCCTCAAACTTTTAGGCCCTGGTAATGATGCCCCTGTTAGGGCTGAAGCAGCAGGTGCTCTTAAATCTCTATCTGCTCAGTGCAAAGACGCTAGGAAAGAGATAGCCAATTCTAATGGAATTCCCGCTTTAATTAATGCAACCATAGCTCCTTCCAAAGAGTTTATGCAAGGTGAGTATGCTCAAGCGTTACAAGAGAATGCTATGTGCGCCCTAGCGAACATCTCTGGTGGTTTGTCTTATGTCATCTCCAGCCTTGGTCAAAGCCTTGAATCATGCTCCTCACCAACCCAAATTGCTGACACATTAGGGGCTTTAGCTTCAGCTCTTATGATATATGATGACAAGGCGGAATCTGCTAGAGCATCAGATCCTTTGGTAGTTGAGCAGTCATTACTCAATCAATTTAAACCTCACTTGCCCTTAGTTGTGCAGGAACGGACCATTGAAGCCTTAGCTAGTTTGTATGGCAATCCTATTCTCTCACTTAAACTTGCAAATTCAGATGCAAAACGTTTGCTTGTTGGTTTAATAACAATGGCTGCTAATGAAGTGCAAGATGAGCTTCTAAAAGCTCTCTTGACATTGTGCAATGGTGAGTGCAACCTATGGCATGCACTTCAAGGCCGTGAAGGAGTTCAGCTATTGATATCTCTTCTGGGTCTTTCATCAGAACAGCAGCAAGAATGTGCTGTTGCCCTGCTTTTCCTTTTATCTATTGCAAATGATGAAAGTAAGTGGTCCATTACTGCTGCTGGTGGTATACCTCCACTTGTTCAAATTTTGGAGTCAGGATCTGTAAAAGCAAAGGAAGACTCAGCAACAATCCTTAGGAATCTATGTGATCACAGTGAGGATATACGTGCTTGTGTTGAAAGTGCTGATGCTGTTCCTGCATTATTGTGGCTATTGAAGAATGGAAGCCCTAATGGGAAAGAGATTGCAGCCAAGACCTTGAATCATTTAATTCACAAATCTGATACCGCAACTATCAGTCAACTTACAGCATTATTGACTAGTGATCTACCTGAATCTAAGGCTTATGTCTTAGATGCTTTGAGAAGTATGCTTTCTGTTGTTGCTCTTAATGATCTTCTACGTGAAGGTAGTGCTGCCAGTGATGCAATCGACACAATGATAAAAATATTGAGCTCAACCAAGGAAGAAACTCAGGCAAAGTCTGCATCAGCTCTGGCAGGAATTTTCGAAATGAGGAAGGATGTGCGTGAAAGCAGCATTGCTGTTAAAACTCTTTGGTCAGTCATGAAGTTGCTTACTGTTGAATCTGAAAGTATCTTAATGGAGTCCTCGCGCTGCCTGGCTACAATATTTCTTTCCATTAAAGAGAACAGGGAGGTAGCTGCTATTGCTAGAGATGTGTTATCCTCCCTAGTTGCGCTGGCTAGCTCTCCAGTTTTGGAAGTGGCGGAGCTGGCAATATGTGCTGTGGCAAATCTTATTTTGGATAGTGAGATTGCTGAGAAAGCTGTTGCAGAAGAAGTTATATTGCCTGCTACAAGAGTATTGCGTGAAGGTACCATTTCTGGAAAAACACATGCAGCAGCAGCCATTGCTCGCCTCTTACATTCTAGGAAAGTTGATTACGCTATAAACGAGTGTGTGAATCGTGCCGGTACTGTTCTTGCATTAGTTTCTTTCCTAGATTCTGCTATGAATGGACCTGTTGTCACTTCAGATGCTCTAGAAGCACTTGCCATTTTGTCCAGGTCAGAAGAAACCAGTGCACATAGTAAACCTGCTTGGGCAGTTTTGGCTGAATTCCCTAAAAGCATAAGCCCAATAGTTCTATCTATTGCTGATTCAACGCCAGTGTTGCAGGATAAAGCTATTGAAATATTATCTCGATTATGTAAGGATCAGCCTGTTGAGTTAGGAGACGCAGTTGCTACTGCCTCTGGGTCTATATCATCAATTGCTAAGAGGGTAATCAATTCCACTTCTACAAATGTAAAGGTCAAAATTGGGGGAGCTGCAATTCTTATTTGTGCTGCTAAAGTAAATCACCAGAGGCTGGTGGAGGATCTAAATTTATCAAACTTGTGTGCTAATCTTGTTCAGTCTCTAGTTGATATGCTTATATCTTCACAGATTACTTTGGGTAACCAGGGTGATGATGACAAGGAAGTCATCAGCATTTGTAGGTATACACATGAAGAAGTCAATGATGGTAACTCCAACACTGGCACTCGCATTATATCTGGTGTCAACTTAGCTGTATGGTTACTGTCAATTCTTGCTTGCCATGATGAAAAATGTAAAATTGCAATAATGGAGGCTGGAGCAGTTGAGGTTCTCACTGATAGGATCGCAAATTGTTTCTCACTATATAGTCAGATTGACTATAAAGAAGATAGCAGCATGTGGATTTGTGCTTTGTTGTTGGCAATATTATTTCAAGATAGGGATATCATAAGAGCACATGCAACTATGAAATCTGTACCAGCCCTTGCCAATTTATTGAAGTCTGAGGAATCAGCAAACAGATATTTTGCTGCGCAATCAATAGCTAGCCTAGTCTGTAATGGTAGTAGGGGAACCCTTCTATCTGTGGCAAACTCCGGGGTGGCAGGTGGACTTATCTCCTTACTTGGCTGTGCTGATACCGATATACAGGATCTTCTGGAATTGTCAGAGGAATTTTATTTGGTGCCCTATCCTGATCAAGTTGCCCTTGAGAGGTTGTTTAGAGTTGATGACATAAGAGTTGGTGCCACTTCTCGGAAGGCAATACCTGCCCTCGTTGACCTTCTCAAACCAATTCCAGATCGCCCAGGAGCACCATTTTTAGCACTTGGGCTTTTGACTCAGCTTGCTAGAGACTGTCCATCGAATAAGATTGTAATGGTGGAGTCTGGGGCCTTAGAGGCACTTACTAAGTATCTTTCATTAGGTCCACAAGATGCAACGGAAGAAGCTGCAACAGATCTGTTAGGAATTTTGTTTAGCAGTCCTGAGATACGGAGACATGAGTCCGCATTTGGTGCTGTTACCCAACTTGTAGCTGTCCTACGTTTAGGAGGAAGAGCTGCAAGGTATAGTGCTGCAAAAGCCTTGGAAAATTTATTCTCTGCTGATCACATTAGAAATGCTGAGACTGCTAGACATGCTGTTCAACCCTTGGTGGAGATTCTTAATAGTGGCTTAGAGAGAGAGCAGCATGCTGCAATTGCTGCGTTAGTTAGGTTACTGAGTGAAAACCCTTCAAGGGCACTTGCTGTTGCAGATGTTGAGATGAATGCAGTAGATATTCTATGCAGGATACTTTCATCAGATTGTTCAATGGACCTGAAAGGGGATGCTGCTGAATTATGTTGTGTTCTTTTTGGAAATATAAGGGTTCGGTCCACGATGGCTGCTGCGCGCTGTGTTGAACCCTTGGTCTCACTCCTTGTAACTGAGTTTAGTCCTGCGCATCATTCAGTTGTCCTTGCATTGGATAGGCTTGTTGATGATGAGCAACTGGCGGAACTAGTTGCTGCACATGGTGCTGTAATTCCTCTCGTAGGCCTAATGTATGGTAGGAACTATGTACTTCATGAGGCCATTTCCAGAGCTCTGGTCAAGTTAGGAAAAGACAGGCCTGCTTGTAAAATGGAAATGGTGAAAGCTGGAGTTATTGAAAGCATGCTTGACATTCTTCATGAAGCACCTGATTATCTGTGTGCAGCCTTTACAGAATTGTTACGTATTCTGACCAATAATGCGAGCATAGCCAAAGGGCCATCAGCTTCTAAAGTGGTTGAACCCCTTTTTTATTTGCTGACTAGACAAGAATTTGGGCCTGATGGACAGCACAGTGCATTGCAGGTTTTGGTTAATATCTTAGAACATCCACAGTGTCGGGCTGACTACACTTTGACTTCTCAGCAAGTTATTGAGCCCCTCATCCCCTTGCTCGATTCTCCAATATCAGCAGTGCAACAGTTGGTTGCTGAACTTCTCTCACATCTACTTTTAGAAGAACACCTTCAGAGGGATCCAGTGACACAGCAAGTAATTGGCCCTCTTATACAAGTTCTTGGTTCTGGCATACATATATTGCAGCAGAGAGCTGTAAAGGCCCTCGTCAGTATTGCAACTGTATGGCCAAATGAAATTGCGAAAGAAGGTGGTGTTATAGAAATTTCCAACGTGATATTGCAAGCTGACCCATCCATTCCTCATGCTCTATGGGAGTCTGCTGCCTCGGTTTTGGCAACTATTCTGCAATTTAGTTCTGAATTCTACTTGGAAGTTCCTGTTGCTGTTTTGGTAAGGTTGCTTCGGTCTGGCTCAGAGAGCACAGTTATTGGTACATTAAATGCTCTTCTTGTGTTAGAAAGTGATGATGGAAGTAGTGCAGAAGCAATGGCTGAAAGTGGTGCCATAGAGGCTCTCTTGGAGCTTCTAAGATCTCATCAGTGTGAGGATACTGCTGCAAGACTCTTAGAAGTATTGCTGAACAATGTAAAGATCAGAGAAACAAAAGTAACTGACTCGGCCATCTTACCATTATCCCAGTACCTCTTGGACCCACAAACCCAAGCACAGCAAGCAAGATTATTAGCAACTTTGGCTCTTGGTGATCTATTCCAGAATGAGGGTCTTGCGCGGACACCTGATGCAGTTTTAGCTTGTCGTGCTTTAGTGAATGTTCTTGAGGACCAACCAACTGAAGAAATGAAAGTTGTAGCCATATGTGCTCTGCAAAACCTTGTGATGTACAGCCGATCAAATAAGAGAGCAGTTGCAGAGGCCGGTGGTGTTCAAATTGTACTTGATCTGATAGGTTCAAGTGATCCTGAAACATCTGTTCAGGCTGCAATGTTTATTAAGCTTCTCTTTTCAAATCATACTATACAAGAGTACGCTTCTAGCGAAACAGTCAGAGCAATAACTGCTGCAATTGAAAAGGATTTATGGGCTACTGGAACTGTGAACGATGAGTATCTTAAAGCCTTAAATTCTCTATTTAGCAATTTCCCCCGGCTCAGAGCAACTGAACCAGCAACACTTAGCATTCCACATTTGGTTACATCTTTAAAGACAGGTTCAGAGGCTACTCAGGAAGCTGCCTTAGATACACTTTCTCTGCTCAGGCAAGCTTGGTCAGCATGCCCGGCAGAAGTTTCAAGAGCTCAGTCCATAGCAGCCGCAGATGCTATTCCTTTGTTGCAGTACTTAATCCAGTCTGGTCCACCTCGGTTTCAGGAAAAGGCAGAATTTTTATTGCAGTGTTTGCCAGGGACATTGGTGGTGATCATCAAGCGTGGTAATAATATGAAGCAGTCTGTTGGAAACCCCAGTGTTTATTGTAAGCTTACTCTTGGAAAAACAGCTCCAAGGCAAACCAAGGTGGTCTCAACTGGCCCTAATCCGGACTGGGATGAGAGCTTTTCATGGTCCTTTGAGAGTCCTCCAAAAGGCCAGAAGCTTCACATTTCTTGCAAAAATAAGAGCAAAATGGGAAAGAGTTCATTTGGGAAAGTGACAATCCAGATTGATCGGGTGGTGATGCTGGGAGCAGTAGCTGGAGAGTACACTCTGTCTCCGGAAAGTAAAAGTGGCCCCTCAAGGAATTTAGAAATAGAATTTCAGTGGTCTAACAAGTGA 6468 0.4331 MATALTWRFAASNGSSSLPANDLEKNGDGKAQDSEPPIPYPVLKMELRERSSNSMEDPDGTLASVAQCIEKLRQSSSSMQEKEYFLKQLLELIDMRENAFSAVGSHSQAVPVLVSLLRSGSLNVKIQAATVLGSLCKENELRVKVLLGGCIPPLLGLLKSSSAEGQVAAAKTIFAVSQGGAKDHVGSKIFSTEGVVPVLWEKLQKGVQNDSVVDSLLTGALKNLSSSTERFWNATLQAGGADILVKLLTTGQSSTLANVCFLLACMMMEDASVCSKVLTAEATKQLLKLLGPGNDAPVRAEAAGALKSLSAQCKDARKEIANSNGIPALINATIAPSKEFMQGEYAQALQENAMCALANISGGLSYVISSLGQSLESCSSPTQIADTLGALASALMIYDDKAESARASDPLVVEQSLLNQFKPHLPLVVQERTIEALASLYGNPILSLKLANSDAKRLLVGLITMAANEVQDELLKALLTLCNGECNLWHALQGREGVQLLISLLGLSSEQQQECAVALLFLLSIANDESKWSITAAGGIPPLVQILESGSVKAKEDSATILRNLCDHSEDIRACVESADAVPALLWLLKNGSPNGKEIAAKTLNHLIHKSDTATISQLTALLTSDLPESKAYVLDALRSMLSVVALNDLLREGSAASDAIDTMIKILSSTKEETQAKSASALAGIFEMRKDVRESSIAVKTLWSVMKLLTVESESILMESSRCLATIFLSIKENREVAAIARDVLSSLVALASSPVLEVAELAICAVANLILDSEIAEKAVAEEVILPATRVLREGTISGKTHAAAAIARLLHSRKVDYAINECVNRAGTVLALVSFLDSAMNGPVVTSDALEALAILSRSEETSAHSKPAWAVLAEFPKSISPIVLSIADSTPVLQDKAIEILSRLCKDQPVELGDAVATASGSISSIAKRVINSTSTNVKVKIGGAAILICAAKVNHQRLVEDLNLSNLCANLVQSLVDMLISSQITLGNQGDDDKEVISICRYTHEEVNDGNSNTGTRIISGVNLAVWLLSILACHDEKCKIAIMEAGAVEVLTDRIANCFSLYSQIDYKEDSSMWICALLLAILFQDRDIIRAHATMKSVPALANLLKSEESANRYFAAQSIASLVCNGSRGTLLSVANSGVAGGLISLLGCADTDIQDLLELSEEFYLVPYPDQVALERLFRVDDIRVGATSRKAIPALVDLLKPIPDRPGAPFLALGLLTQLARDCPSNKIVMVESGALEALTKYLSLGPQDATEEAATDLLGILFSSPEIRRHESAFGAVTQLVAVLRLGGRAARYSAAKALENLFSADHIRNAETARHAVQPLVEILNSGLEREQHAAIAALVRLLSENPSRALAVADVEMNAVDILCRILSSDCSMDLKGDAAELCCVLFGNIRVRSTMAAARCVEPLVSLLVTEFSPAHHSVVLALDRLVDDEQLAELVAAHGAVIPLVGLMYGRNYVLHEAISRALVKLGKDRPACKMEMVKAGVIESMLDILHEAPDYLCAAFTELLRILTNNASIAKGPSASKVVEPLFYLLTRQEFGPDGQHSALQVLVNILEHPQCRADYTLTSQQVIEPLIPLLDSPISAVQQLVAELLSHLLLEEHLQRDPVTQQVIGPLIQVLGSGIHILQQRAVKALVSIATVWPNEIAKEGGVIEISNVILQADPSIPHALWESAASVLATILQFSSEFYLEVPVAVLVRLLRSGSESTVIGTLNALLVLESDDGSSAEAMAESGAIEALLELLRSHQCEDTAARLLEVLLNNVKIRETKVTDSAILPLSQYLLDPQTQAQQARLLATLALGDLFQNEGLARTPDAVLACRALVNVLEDQPTEEMKVVAICALQNLVMYSRSNKRAVAEAGGVQIVLDLIGSSDPETSVQAAMFIKLLFSNHTIQEYASSETVRAITAAIEKDLWATGTVNDEYLKALNSLFSNFPRLRATEPATLSIPHLVTSLKTGSEATQEAALDTLSLLRQAWSACPAEVSRAQSIAAADAIPLLQYLIQSGPPRFQEKAEFLLQCLPGTLVVIIKRGNNMKQSVGNPSVYCKLTLGKTAPRQTKVVSTGPNPDWDESFSWSFESPPKGQKLHISCKNKSKMGKSSFGKVTIQIDRVVMLGAVAGEYTLSPESKSGPSRNLEIEFQWSNK* 2156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0298 2155 Gene3D - 427 644 IPR011989 -
Lja6g0298 2155 Pfam Armadillo/beta-catenin-like repeat 106 136 IPR000225 GO:0005515
Lja6g0298 2155 Pfam Armadillo/beta-catenin-like repeat 528 567 IPR000225 GO:0005515
Lja6g0298 2155 Gene3D C2 domain 2033 2155 IPR035892 -
Lja6g0298 2155 Pfam C2 domain 2034 2125 IPR000008 -
Lja6g0298 2155 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 538 580 IPR000225 GO:0005515
Lja6g0298 2155 SUPERFAMILY ARM repeat 61 815 IPR016024 -
Lja6g0298 2155 CDD C2 2036 2126 - -
Lja6g0298 2155 SUPERFAMILY ARM repeat 219 485 IPR016024 -
Lja6g0298 2155 SMART arm_5 819 861 IPR000225 GO:0005515
Lja6g0298 2155 SMART arm_5 1233 1274 IPR000225 GO:0005515
Lja6g0298 2155 SMART arm_5 1315 1356 IPR000225 GO:0005515
Lja6g0298 2155 SMART arm_5 138 178 IPR000225 GO:0005515
Lja6g0298 2155 SMART arm_5 527 567 IPR000225 GO:0005515
Lja6g0298 2155 SMART arm_5 1485 1525 IPR000225 GO:0005515
Lja6g0298 2155 SMART arm_5 96 137 IPR000225 GO:0005515
Lja6g0298 2155 SMART arm_5 569 609 IPR000225 GO:0005515
Lja6g0298 2155 SMART arm_5 313 362 IPR000225 GO:0005515
Lja6g0298 2155 SMART arm_5 1861 1901 IPR000225 GO:0005515
Lja6g0298 2155 SMART arm_5 1443 1483 IPR000225 GO:0005515
Lja6g0298 2155 SMART arm_5 1401 1442 IPR000225 GO:0005515
Lja6g0298 2155 SMART arm_5 1734 1773 IPR000225 GO:0005515
Lja6g0298 2155 SMART arm_5 1188 1231 IPR000225 GO:0005515
Lja6g0298 2155 SMART arm_5 486 525 IPR000225 GO:0005515
Lja6g0298 2155 SMART arm_5 1569 1611 IPR000225 GO:0005515
Lja6g0298 2155 SMART arm_5 735 773 IPR000225 GO:0005515
Lja6g0298 2155 SMART arm_5 270 311 IPR000225 GO:0005515
Lja6g0298 2155 Gene3D - 1704 1822 IPR011989 -
Lja6g0298 2155 Gene3D - 1371 1703 IPR011989 -
Lja6g0298 2155 Gene3D - 53 412 IPR011989 -
Lja6g0298 2155 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 20 2155 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Lja6g0298 2155 Gene3D - 1182 1370 IPR011989 -
Lja6g0298 2155 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2034 2139 IPR035892 -
Lja6g0298 2155 Coils Coil 299 319 - -
Lja6g0298 2155 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1200 1244 IPR000225 GO:0005515
Lja6g0298 2155 SUPERFAMILY ARM repeat 579 1634 IPR016024 -
Lja6g0298 2155 MobiDBLite consensus disorder prediction 13 40 - -
Lja6g0298 2155 ProSiteProfiles C2 domain profile. 2015 2132 IPR000008 -
Lja6g0298 2155 SMART C2_3c 2035 2131 IPR000008 -
Lja6g0298 2155 Gene3D - 874 1174 IPR011989 -
Lja6g0298 2155 SUPERFAMILY ARM repeat 1182 1367 IPR016024 -
Lja6g0298 2155 Gene3D - 652 870 IPR011989 -
Lja6g0298 2155 Gene3D - 1823 2032 IPR011989 -
Lja6g0298 2155 SUPERFAMILY ARM repeat 1640 2032 IPR016024 -
Lja6g0298 2155 PANTHER CELLULOSE SYNTHASE-INTERACTIVE PROTEIN 20 2155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0298 Lja-Chr6 7440466 7451461 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0298 450 607 U-box Gene Family AT3G46510 31.658 5.81e-14 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0298 - - gmx:100816765 3715.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0691 4 5683951 5695265 Lja6g0298 6 7440466 7451461 PCT