Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0291 ATGAGCTTCTGCATGCATGAGCTGGAGGGCTCGCCGGAGTCACCGCCGGAGTCGCCGGTGCAGAAGTGGAAGTACATGGATGAGATAATGGCGAAGGCGCGCTACACGGTGGTGGAACGCGAGGACTATGATGATCTTGTCTGTGACCAATGCGGGTCCGACGACCGGCCGGACGAGTTACTGCTCTGTGACAAATGCGACAAAGGCTTTCACATGAAATGCCTGAGTCCAATCGTCATCAGGGTTCCGATTGGATCATGGCTTTGCCCTAAGTGCTCAAGGACGAAGAAGCCTAAGAGATTGACAGATAATAGCATATTGAAATTTTTCGGGATTAAGAGGCGTGATTTTGTTACAAAACGCATAGCTCCTTCTCGGGATGCTAGGAGGCGCCGGAGATCTCGGCCTCTAGTTGCCCAGAAGAAAAAGAGGATACTGTTACCATTTATTCCTTCAGAAGATCCTGACCAGAGACTGAAACAAATGGGTTCCCTTGCTTCTGCTTTAAAAGCCTTGCATATGGAATACATTGATCACCTCACATACATGCCTGGAATGGCTCCTGAATCTGCTAATGTCTCCAATTTAGAAATGGGTGTTGTCCATCAGACTATCACCAAGGAAGACACAAAGACCTTGGAATACTGCAAAGATATGTGTACAAGAGGCGAATGCCCTCCCTTAATGGTTGTTTTCGATTCACGTGAAGGCTATACCGTGGAGGCTGATAGCCCAATCAAGGATATGACATTTATTGCTGAGTACACTGGTGATGTGGATTACATTAAGAATCGAGAATCTGATGATGGTGACAGTATGATGACACTTCTTCTTTCAAGACAACATTCTCAAGGTCTTGTTATATGTGCTGATAAACGCGGAAACATTGCTCGCTTTATCAGTGGCATCAACAATCATACTAAGGAAGGTAGGAAGAAGCAGAACTGTACATGTGTAAGATACAATGTTAATGGTCAATTCCGGGTCTTTTTGGTTGCTATTCGTGATATTGCCAAGGGGGAGAGGCTTTATTATAATTATAATGGTTATGAGAATGCATATCCGACTCACAATTTTGTCTAG 1083 0.4497 MSFCMHELEGSPESPPESPVQKWKYMDEIMAKARYTVVEREDYDDLVCDQCGSDDRPDELLLCDKCDKGFHMKCLSPIVIRVPIGSWLCPKCSRTKKPKRLTDNSILKFFGIKRRDFVTKRIAPSRDARRRRRSRPLVAQKKKRILLPFIPSEDPDQRLKQMGSLASALKALHMEYIDHLTYMPGMAPESANVSNLEMGVVHQTITKEDTKTLEYCKDMCTRGECPPLMVVFDSREGYTVEADSPIKDMTFIAEYTGDVDYIKNRESDDGDSMMTLLLSRQHSQGLVICADKRGNIARFISGINNHTKEGRKKQNCTCVRYNVNGQFRVFLVAIRDIAKGERLYYNYNGYENAYPTHNFV* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0291 360 Pfam SET domain 262 348 IPR001214 GO:0005515
Lja6g0291 360 Gene3D SET domain 130 360 IPR046341 -
Lja6g0291 360 MobiDBLite consensus disorder prediction 1 20 - -
Lja6g0291 360 SUPERFAMILY FYVE/PHD zinc finger 35 100 IPR011011 -
Lja6g0291 360 SMART PHD_3 47 93 IPR001965 -
Lja6g0291 360 PANTHER HISTONE ACETYLTRANSFERASE 14 358 - -
Lja6g0291 360 ProSiteProfiles Zinc finger PHD-type profile. 45 95 IPR019787 -
Lja6g0291 360 ProSiteProfiles SET domain profile. 226 348 IPR001214 GO:0005515
Lja6g0291 360 CDD SET_ATXR5_6-like 223 360 - -
Lja6g0291 360 SMART set_7 226 353 IPR001214 GO:0005515
Lja6g0291 360 ProSitePatterns Zinc finger PHD-type signature. 48 92 IPR019786 -
Lja6g0291 360 Pfam PHD-finger 47 94 IPR019787 -
Lja6g0291 360 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR5 14 358 - -
Lja6g0291 360 SUPERFAMILY SET domain 172 348 IPR046341 -
Lja6g0291 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 106 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0291 Lja-Chr6 7197788 7201415 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0291 45 128 C2H2 Transcription Factor Family AT3G01460 30.952 4.70e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lja6g0291 SET 3.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0291 K24406 - gmx:100785817 476.863