Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0287 ATGACGCAGCAGAATGTGGTAGTGTCTGATTCCCAATCTGGAGTTGCCCTACCAGTTTTCCCAACATCATCACAAAAGCCACAAGGAGGGTACATTCCCATTCCTAGGATGAGGGTCTTGAAGAACCTTGAAATCAATGCATGGATTGAGTCCATGAGATCCTGCTCTCCCACACATCGTAAATCCGCATCCTCTTTTGCTGAAGAGCGAAGCTCTTGGATGCTTAACCACCCATCGGCATTAGACATGTTTGACGAAATTATGGAAGCATCAAAGGGAAAGCAAATTGTCATGTTTTTGGACTATGATGGTACACTGTCCCCTATAGTGGACGACGCTGACTGTGCTTTTATGTCTGATTCGATGAGAAAAACAGTGAGGAAGCTTGCAAGGTGTTGTCCTACTGCTATAGTGACTGGCAGAAGCAAGGACAAGGTGTACAATTTTGTTCGGTTGGCAGAGCTATATTATGCTGGAAGCCATGGCATGGATATTAAAGGGCCAACAAGAAGTTCCAAATACAACAAAGATAGCAAAGCTAAAACAATTCTTTTTCAACCTGCCAGTGAATTTCTTCCAATGATAAATGAGGTGTACCAACAATTGGTTGAGAAGACAAAATCAACTCCTGGAGCCAAGGTTGAGAACAACAAGTTCTGCACCTCCGTTCATTTTCGTTGCGTTGATGAACAGAAATGGAGTGAACTGGCATACCAAGTGAAATCAGTGATAAAGAACTACCCAAAGCTTCGCCTTACACAAGGAAGAAAGGTACTAGAGATTCGTCCTGCTATTAAATGGGACAAAGGAAAAGCCCTGGAATTTTTATTAGAGTCACTTGGATTGGCCAATTGCAGCGATGTGTTTCCTGTTTATATTGGCGATGATCGATCTGATGAAGATGCGTTCAAGAAATTAAGAGACAGAGGACAAGGCTTTGGCATTCTTGTGTCGAAGTTTCCAAAAGACACAAGTGCATCTTACTCTTTGCAGGAACCCAATGAGGTGATGTATTTTCTTCAACGCTTGGTGGAGTGGAAACATGGATCACTGCGAGCGGGAGTTATGAGTCACATGAAATGA 1083 0.4294 MTQQNVVVSDSQSGVALPVFPTSSQKPQGGYIPIPRMRVLKNLEINAWIESMRSCSPTHRKSASSFAEERSSWMLNHPSALDMFDEIMEASKGKQIVMFLDYDGTLSPIVDDADCAFMSDSMRKTVRKLARCCPTAIVTGRSKDKVYNFVRLAELYYAGSHGMDIKGPTRSSKYNKDSKAKTILFQPASEFLPMINEVYQQLVEKTKSTPGAKVENNKFCTSVHFRCVDEQKWSELAYQVKSVIKNYPKLRLTQGRKVLEIRPAIKWDKGKALEFLLESLGLANCSDVFPVYIGDDRSDEDAFKKLRDRGQGFGILVSKFPKDTSASYSLQEPNEVMYFLQRLVEWKHGSLRAGVMSHMK* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0287 360 PANTHER TREHALOSE-PHOSPHATE PHOSPHATASE C-RELATED 3 352 - -
Lja6g0287 360 CDD HAD_TPP 97 337 - -
Lja6g0287 360 TIGRFAM T6PP: trehalose-phosphatase 94 344 IPR003337 GO:0003824|GO:0005992
Lja6g0287 360 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 98 309 IPR006379 -
Lja6g0287 360 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 3 352 IPR044651 GO:0004805|GO:0005992
Lja6g0287 360 Gene3D - 212 355 IPR023214 -
Lja6g0287 360 Gene3D - 96 186 IPR023214 -
Lja6g0287 360 Pfam Trehalose-phosphatase 99 333 IPR003337 GO:0003824|GO:0005992
Lja6g0287 360 SUPERFAMILY HAD-like 97 345 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0287 Lja-Chr6 7108407 7112114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0287 98 343 Trehalose Biosynthesis Gene Families AT1G60140 26.493 1.03e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0287 K01087 - gmx:100794430 607.06