Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0262 ATGTCAAATCTGGATCCGGATTCGCAAGCCACCACGACCCGGAAACTTCACCCGCACGAGGATCCGAATTTCACCGCCGCAGACCCTCATGTTCCGCTTCGGAACCTCTTCCTGGTTCGGACCACGATGGATTCTCTGCATCATTTCTTATCTCAATCCATCAACACCAACTCTCCCCTCGCCGCAGATCAAATAACCGCCGTCTCCAACCAGATCGTCTCCGCCCTCCATCAGACCGTCGTCAACGGCGCCGCCCTTGTATCCTGCTCCCAAAATCTCACCTCCGCCGCCGGAGCCTCTGTCCTCCCGCCGACTATCTCCATTCCGGAGAAATCAGTGAAGCAGACGCTCGATTCGAAGGTTGAGTTTGCAGAAGACGACACCGTCGAAGGCCGCGACGGCGATTGGGAGATCGTGGAGCTTGACGCGGTGGAGCTTCTCGCGGAGCACATCCACTTCTGCGAGATCTGCGGGAAAGGCTTTCGGCGCGACGCGAATCTCCGGATGCACATGCGCGCGCACGGGAACCAGTTTAAGACAGCGGAGGCTCTGGCGAAGCCGCTGGTGGAAGATGCCGGCGGTCAGCGGGAGAGGCGGTTCTCATGTCCGTTCAAAGGGTGCAACCGGAACAAGCGGCACCGGAGGTTCAGGGCGTTGAAATCGGTGGTTTGCGTGAGGAACCATTTCAAGAGGAGCCACTGCCCGAAGATGTACGCGTGCGACCGGTGCCACAAGAGGAAGAGCTTCTCCGTGCTCTCCGACTTGAAGAGCCACATGAGGCACTGCAGCGAGTCGAGGTGGAGGTGCTCGTGCGGGACTACCTTTTCTAGGAAGGACAAGTTGTTTGGACACATTGCCCGGTTTGAGGGTCACGTGCCTGCGATAGCGTTGGACGAAATAGGGGAGAAAGGGAAGCACGTGGTGGAGGAAAATGAAGAAGATCCAATTAAGGAAGATGAACTGAGCAATTGTTTTCTGAATGATGATGGGTTGCCGGAAGGGTTCTTTGATGATTTTGGCTCAATTGATAACTATTGTTTGCGGGAAGTTTTGGGATTTCCTAGTAGTTTCAAATGA 1077 0.5543 MSNLDPDSQATTTRKLHPHEDPNFTAADPHVPLRNLFLVRTTMDSLHHFLSQSINTNSPLAADQITAVSNQIVSALHQTVVNGAALVSCSQNLTSAAGASVLPPTISIPEKSVKQTLDSKVEFAEDDTVEGRDGDWEIVELDAVELLAEHIHFCEICGKGFRRDANLRMHMRAHGNQFKTAEALAKPLVEDAGGQRERRFSCPFKGCNRNKRHRRFRALKSVVCVRNHFKRSHCPKMYACDRCHKRKSFSVLSDLKSHMRHCSESRWRCSCGTTFSRKDKLFGHIARFEGHVPAIALDEIGEKGKHVVEENEEDPIKEDELSNCFLNDDGLPEGFFDDFGSIDNYCLREVLGFPSSFK* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0262 358 Gene3D Classic Zinc Finger 235 294 - -
Lja6g0262 358 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 17 356 - -
Lja6g0262 358 SMART c2h2final6 200 233 IPR013087 -
Lja6g0262 358 SMART c2h2final6 152 174 IPR013087 -
Lja6g0262 358 SMART c2h2final6 238 261 IPR013087 -
Lja6g0262 358 SMART c2h2final6 267 291 IPR013087 -
Lja6g0262 358 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 17 356 IPR044300 GO:0010044|GO:0010447
Lja6g0262 358 Gene3D Classic Zinc Finger 151 223 - -
Lja6g0262 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 152 179 IPR013087 -
Lja6g0262 358 MobiDBLite consensus disorder prediction 1 27 - -
Lja6g0262 358 ProSitePatterns Zinc finger C2H2 type domain signature. 154 174 IPR013087 -
Lja6g0262 358 Pfam Zinc finger, C2H2 type 153 174 IPR013087 -
Lja6g0262 358 SUPERFAMILY beta-beta-alpha zinc fingers 149 175 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0262 Lja-Chr6 5713904 5715960 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0262 125 300 C2H2 Transcription Factor Family AT1G34370 59.341 1.57e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja6g0262 zf-C2H2 0.00025 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0262 - - lja:Lj0g3v0231229.1 546.199