Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0259 ATGGCTTGTGTTCCGGAAACCATCTGTACTCATTTGACACTAGGGACACTGGATGTGTGCCCGTATGGAAAGGAATCATCTTGCAGTACTACGGTTGAGAATGATAATGCAAGAAGACGTCATCATAGAGCTGGAAACGAATTAGCTGCGGCAGCAGCAGAACAGAGAAGGCGCTGGGGTTACTCCCCTGAATTGATGCTTTGTGATGATCCATGGAAGATAACGAAGAAGCTGACACAGAGTGATCTTGGTTACTTGAGTAGACTCTTGATTAGCAAAGATTTGGCTGAGGACTTAGTGCTTCCTGTGTTGACACCTGAACAAAGAGTGGCTCTCTACCAAAACGGAACTCAAATCTTGATTTGGGACATGGACACCCAATCCCTACATTACTTGGTTTTCAAGTTTTGGGTTTCTTCAAGAAGTTATGTTTTCATTGACAATTGGACTAAAGATTTCGTCAAAAGAAGGGGCTTGAAGAAAGGTGATGAAATCAAACTTCATTGGGATCCATACAAGAAGTGCTTCGATTTTTCAGTTCTTTATTCTAATTAG 555 0.4198 MACVPETICTHLTLGTLDVCPYGKESSCSTTVENDNARRRHHRAGNELAAAAAEQRRRWGYSPELMLCDDPWKITKKLTQSDLGYLSRLLISKDLAEDLVLPVLTPEQRVALYQNGTQILIWDMDTQSLHYLVFKFWVSSRSYVFIDNWTKDFVKRRGLKKGDEIKLHWDPYKKCFDFSVLYSN* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0259 184 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 27 181 - -
Lja6g0259 184 Coils Coil 34 54 - -
Lja6g0259 184 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 27 181 - -
Lja6g0259 184 CDD B3_DNA 72 181 IPR003340 GO:0003677
Lja6g0259 184 SUPERFAMILY DNA-binding pseudobarrel domain 70 180 IPR015300 -
Lja6g0259 184 Gene3D - 71 180 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0259 Lja-Chr6 5651889 5652443 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0259 43 170 B3 DNA Binding Superfamily AT3G24650 34.091 3.00e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0259 - - lja:Lj0g3v0332729.1 233.802