Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0257 ATGATGGAAGCAAATCAAGCAATCACTAACCAAAGCCAAAATGGTTCCTTCTTCTGCACTACTACTGCTAAAGGCGCTGTTACTGTTAGTACTACTGATCCCTTGAATTGGGGTGTGGCGGCGGAGTCAATGAAGGGGAGCCACTTGGACGAGGTGAAGCACATGGTGGAGGAGTACCGCAAGCCGGTTGTCAGGCTCGGCGGAGAGACGCTGACGATAGCTCAGGTAGCTGCCATTGCCACCGCCACCGCCGCTGAAGGAGTGAGCGTTGAGCTGTGCGAGACAGCTAGAGCCGGCGTTAAGGCGAGCAGTGACTGGGTCAAGAATAGCAGCACTGACAGTAATGGTGTCACCACCGGCTTCGGTGCCACCTCCCACCGCAGAACCAAACAAGGCAATGCTTTGCAGCAAGAGCTAATCAGGTTTTTGAACGTTGGAATTTTTGGCAATGGTACTGAGTCATCCCACACATTGCCACAATCTGCAACTAGAGCTTCCATGCTAGTGAGGATCAACACTCTTCTTCAAGGATATTCAGGCATTAGATTTGAAATCTTAGAAGCCATCACTCAGCTCCTCAACAACAACATCACCCCATGTTTGCCGCTTCGTGGCACCGTCACGGCTTCCGGTGATCTAGTGCCTCTTTCTTACATTGCTGGTTTGCTCACTGGCCGACCAAACTCCAAAGCTGTTGGACCTTCTGGAGAGAAACTCAATGCCAAGGAAGCTTTCCAATTGGCTGGCATCAACTCCGGTTTCTTTGAATTGCAACCGAAGGAGGGGCTTGCCCTTGTTAATGGCACTGCTGTTGGTTCTGGCTTGGCCTCTATTGTTCTCTTTGAGGCTAATATACTGGCAGTGTTGTCTGAGGTTCTATCAGCTATTTTTGCCGAAGTGATGCAAGGGAAGCCTGAATTCACCGACCATTTGACCCATAAGTTAAAGCACCACCCTGGTCAAATTGAGGCTGCTGCTATCATGGAACACATTTTGGATGGGAGCTCCTACATCAAAGCAGCAAAGAAGTCGCACGAGATGGATCCCTTGCAAAAGCCAAAACAAGACCGATATGCACTCAGAACTTCACCTCAATGGCTCGGTCCCCTAATCGCAGTGATTCGATTCTCGACAAAGTCAATCGAGGGAGAGATTAACTCCGTGAACGACAACCCTTTGATCGACGTTTCGAGAAACAAGGCTTTGCATGGAGGCAATTTCCAAGGAACCCCTATTGGAGTTTCCATGGACAACACGCGTCTCGCACTTGCCTCAATTGGAAAGCTCATGTTTGCCCAGTTCACTGAGCTTGTGGATGATCATTACAACAATGGGTTGCCATCAAATCTCACTGCAAGTAGAAACCCCAGCTTGGATTATGGTCTCAAGGGAGCTGAAATCACCATGGCTTCTTATTGCTCAGAACTCCAATATCTTGCGAATCCGGTCACAACCCATGTCCAAAGTGCTGAGCAGCACAACCAAGATGTGAACTCTTTGGGTTTGATTTCTTCTAGAAAAACATACGAAGCCATTGAGATCCTTAAACTCATGTCCTCCACATTCTTGATTGCACTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAACTTGAGATACTCGGTTAAGAACACGGTAAGTCAGGTAGCCAAGAGGACTCTTATCACAGATGTCAATGGAGAACTCCATCCTTCTAGATTTTGTGAAAAAGATTTGTTGAAAGTGGTTGATAGGGAGGCTGTATTTGCCTATATTGATGACCCCTGCAGTGCTACATACCCATTGATGCAAAAGCTAAGGCAAGTGTTGGTGGATCATGCATTAGTAAGCGAAGAAAATGAGAAGAACTCAAACACATCAATCTTTCAAAAGATTGCAACTTTTGAGGATGAGTTAAAGAGTCTCTTGCCAAAGGAGGTTGAAAGTGCAAGGGCTGCATATGAGAGTGGAAATCCAAAAATTTCAAACAAAATCAATGATTGCAGATCTTACCCACTGTACAAGTTTGTGAGGGAGGAGTTGGGAACAGAATTGCTAACTGGAGAAAAGGTTAGATCACCAGGTGAGGAATGTGATAAAGTGTTCACAGCAATATGTCAGGGTAAAATTATTGATCCTCTTATAAAATGTCTTGGGGAGTGGAACGGTGCCCCAATTCCAATTTGTTAA 2172 0.4636 MMEANQAITNQSQNGSFFCTTTAKGAVTVSTTDPLNWGVAAESMKGSHLDEVKHMVEEYRKPVVRLGGETLTIAQVAAIATATAAEGVSVELCETARAGVKASSDWVKNSSTDSNGVTTGFGATSHRRTKQGNALQQELIRFLNVGIFGNGTESSHTLPQSATRASMLVRINTLLQGYSGIRFEILEAITQLLNNNITPCLPLRGTVTASGDLVPLSYIAGLLTGRPNSKAVGPSGEKLNAKEAFQLAGINSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYIKAAKKSHEMDPLQKPKQDRYALRTSPQWLGPLIAVIRFSTKSIEGEINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFTELVDDHYNNGLPSNLTASRNPSLDYGLKGAEITMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTYEAIEILKLMSSTFLIALCQAIDLRHLEENLRYSVKNTVSQVAKRTLITDVNGELHPSRFCEKDLLKVVDREAVFAYIDDPCSATYPLMQKLRQVLVDHALVSEENEKNSNTSIFQKIATFEDELKSLLPKEVESARAAYESGNPKISNKINDCRSYPLYKFVREELGTELLTGEKVRSPGEECDKVFTAICQGKIIDPLIKCLGEWNGAPIPIC* 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0257 723 SUPERFAMILY L-aspartase-like 33 723 IPR008948 GO:0003824
Lja6g0257 723 Gene3D - 24 269 IPR024083 -
Lja6g0257 723 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 25 723 - -
Lja6g0257 723 Pfam Aromatic amino acid lyase 71 537 IPR001106 -
Lja6g0257 723 Gene3D - 536 657 IPR023144 -
Lja6g0257 723 CDD PAL-HAL 86 533 IPR001106 -
Lja6g0257 723 PANTHER HISTIDINE AMMONIA-LYASE 25 723 IPR001106 -
Lja6g0257 723 Gene3D Fumarase/aspartase (Central domain) 270 718 - -
Lja6g0257 723 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 33 712 IPR005922 GO:0005737|GO:0006559|GO:0016841
Lja6g0257 723 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 205 221 IPR022313 GO:0016841
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0257 Lja-Chr6 5581177 5583601 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0257 27 723 Monolignol Biosynthesis Gene Families AT2G37040 81.429 0.0 1202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0257 K10775 - gmx:100787902 1207.59