Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0256 ATGTTTGCGGAAATGGGCTTGGTTTGTGTTCTTTTGCTATTAGCTAGTGTAAGCTCTTTTGCGCAGCCTGAGCTTGATTTACAAGAAGATGCACTATTTGCTTTGAAGTCATCACTGAATGCTTCTTCCAACCAGCTTACTAACTGGAACAAATATCAAGTTAACCCTTGCACTTGGTCCAATGTTTACTGTGACCAGAATAGCAATGTTGTTCAAGTTTCACTAGCATTTATGGGATTCACAGGATCTTTGACACCAAGAATAGGAGCTCTAAAAAGTCTTACCACTCTTTCTTTGCAAGGGAACAACATAACCGGTAGCATACCAAATGAATTTGGAAATCTTACAAGCTTGGTCAGATTGGATCTGGAAAACAACAAATTAACTGGTGAAATACCATCTTCCCTTGGTAATCTTAAAAAGCTTCAGTTCTTGACATTGAGCCAAAACAATCTCAGTGGGGCTATTCCAGAATCATTTGCCAGTCTCCCAAGCCTGATCAATGTTCTGCTAGATTCTAATGATCTTAGTGGCCAGATCCCAGAGAAGTTATTCGACGTTCCTAAGTTCAATTTCACTGGAAATAAGTTGGACTGTGGCGTGAATTATCATCATCTTTGCACATCTGATGATGAAGATCAAGGTTCATCTCACAAATCAAAAGTAGGCCTCATAGTTGGAATAGTTGTAGGTTTAGTTTTTATCCTTTTTCTTGGTGGCCTGCTCTTTTTCTGGTGCAAGGGGTACAAGGGTGAAGTTTTTGTAGACGTACCAGGAGAAGTTGATCGGCGGATTACTTTTGGTCAAATAAAAAGATTTTCCTGGAGAGAACTACAGATAGCTACGGACAACTTCAGTGAGAAAAATGTTCTGGGGCAGGGAGGCTTTGGAAAGGTTTATAAAGGTGTTCTAGCTGATGGCACAAAAGTTGCTGTCAAAAGGTTAACTGACTATCAAAGTCCTGGGGGTGATGCAGCTTTCCAGCGTGAAGTTGAGATGATAAGTGTAGCTGTCCATAGGAACCTGTTACGGCTCATTGGTTATTGTACTACTCCAACTGAACGCCTCTTAGTTTATCCCTTCATGCAGAACTTGAGTGTTGCCTATCGTATACGAGAACTCAAACCGGGGGAACCTGTTTTGGATTGGGCTACAAGAAAACGAGTGGCTCTGGGAACAGCCCGTGGCCTAGAATATCTTCATGAACAATGCGATCCAAAGATTATTCATAGAGATGTGAAGGCAGCTAATATACTGCTCGATGGAGATTTTGAAGCAGTTGTGGGTGACTTCGGTTTGGCAAAATTAGTTGATGTTCGAAAGACTAATGTGACAACCCAAATTCGTGGGACAATGGGCCATATAGCTCCAGAATACTTGTCCACTGGAAAATCTTCAGAAAAAACAGATGTTTTTGGTTATGGAATTATGCTTTTGGAGCTTGTTACAGGTCAACGTGCAATCGACTTTTATCGTTTGGAAGAGGAAGATGATGTGTTATTGCTTGACCATGTTAAGAAACTCCAACGGGAGAAAAGACTGGATGCTATTGTTGACTGCAACCTTAATAAAAACTACAACATAGAAGAGGTTGAAATGATTGTACAAGTTGCATTACTTTGCACACAAGCATCGGCGGAGGGTCGTCCAGCAATGTCAGATGTAGTAAGAATGTTAGAGGGAGAAGGTCTGGCTGAAAGGTGGGAGGAGTGGCAGCACGTGGAGGTCACTCGGAGGCAAGACCATGAGAGACTACAAAGAAGATTTCATTGGGGAGAAGATTCAGTTTATAACCAAGATGCTATTGAGTTATCGGGTGGAAGATGA 1827 0.416 MFAEMGLVCVLLLLASVSSFAQPELDLQEDALFALKSSLNASSNQLTNWNKYQVNPCTWSNVYCDQNSNVVQVSLAFMGFTGSLTPRIGALKSLTTLSLQGNNITGSIPNEFGNLTSLVRLDLENNKLTGEIPSSLGNLKKLQFLTLSQNNLSGAIPESFASLPSLINVLLDSNDLSGQIPEKLFDVPKFNFTGNKLDCGVNYHHLCTSDDEDQGSSHKSKVGLIVGIVVGLVFILFLGGLLFFWCKGYKGEVFVDVPGEVDRRITFGQIKRFSWRELQIATDNFSEKNVLGQGGFGKVYKGVLADGTKVAVKRLTDYQSPGGDAAFQREVEMISVAVHRNLLRLIGYCTTPTERLLVYPFMQNLSVAYRIRELKPGEPVLDWATRKRVALGTARGLEYLHEQCDPKIIHRDVKAANILLDGDFEAVVGDFGLAKLVDVRKTNVTTQIRGTMGHIAPEYLSTGKSSEKTDVFGYGIMLLELVTGQRAIDFYRLEEEDDVLLLDHVKKLQREKRLDAIVDCNLNKNYNIEEVEMIVQVALLCTQASAEGRPAMSDVVRMLEGEGLAERWEEWQHVEVTRRQDHERLQRRFHWGEDSVYNQDAIELSGGR* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0256 608 CDD TM_EGFR-like 220 245 - -
Lja6g0256 608 SMART serkin_6 285 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0256 608 Gene3D Phosphorylase Kinase; domain 1 254 361 - -
Lja6g0256 608 Pfam Protein kinase domain 286 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0256 608 ProSitePatterns Protein kinases ATP-binding region signature. 291 313 IPR017441 GO:0005524
Lja6g0256 608 SUPERFAMILY Protein kinase-like (PK-like) 264 560 IPR011009 -
Lja6g0256 608 SMART LRR_typ_2 91 114 IPR003591 -
Lja6g0256 608 SMART LRR_typ_2 115 138 IPR003591 -
Lja6g0256 608 SMART LRR_typ_2 139 162 IPR003591 -
Lja6g0256 608 SMART LRR_typ_2 163 187 IPR003591 -
Lja6g0256 608 PANTHER LRR RECEPTOR-LIKE KINASE 6 608 - -
Lja6g0256 608 ProSiteProfiles Leucine-rich repeat profile. 93 115 IPR001611 GO:0005515
Lja6g0256 608 Pfam Leucine rich repeat 91 128 IPR001611 GO:0005515
Lja6g0256 608 Gene3D Ribonuclease Inhibitor 25 223 IPR032675 -
Lja6g0256 608 ProSitePatterns Serine/Threonine protein kinases active-site signature. 408 420 IPR008271 GO:0004672|GO:0006468
Lja6g0256 608 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Lja6g0256 608 Gene3D Transferase(Phosphotransferase) domain 1 362 579 - -
Lja6g0256 608 SUPERFAMILY L domain-like 29 195 - -
Lja6g0256 608 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 6 608 - -
Lja6g0256 608 ProSiteProfiles Protein kinase domain profile. 285 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0256 Lja-Chr6 5565086 5580970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0256 1 608 Receptor kinase-like Gene Family AT5G10290 72.638 0.0 875
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Lja6g0256 Pkinase 1.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0256 - - gmx:100786654 1002.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0256 6 5565086 5580970 Lja4g1086 4 9513810 9523879 PCT