Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0253 ATGGCAATTGTACCTTTTGGTAGTACTCCAGCTACTCAATGGGGGATTCGTCCTCAGCTTCTTGTGAGATCCACTGCCATGGCCAAGATTGCATCATCCACTCACAACGTCACAAGCAGGGTAAGCTTTATGGCTGCTCGCAGTTCAAGCATTTTTTCCCGGGATTCCCTGCATGCACTATTTGATGCCGGTTCATCTCAAACTTTGCATCGTCGCAGGGGTTCAAGGTTGATAGTTAGAGCCGATGCAGATTTCTATTCCACCCTTGGGGTATCGAAAAATGCTAGCAAATCTGAAATTAAGAGTGCTTATCGGAAGCTTGCCCGGAATTATCACCCAGATGTGAACAAAGAACCTGGTGCAGAACAAAAGTTTAAGGACATTAGTAATGCATATGAGGTCCTATCAGATGATGAGAAACGGTCCATATACGACAGATATGGAGAGGCTGGGCTTAAAGGTCAAGGAATGGGTATGGGGGATTTCACCAGTCCTTTTGACCTCTTTGAGACACTGTTTGAGGGCATGAATAGTGGTGGCATGGGCGGTAGAGGTTCTTGGAATGGGGCAGTTGATGGTGAAGATGAGTATTACAGTCTACTATTGAACTTCAAAGAAGCTGTTTTTGGAGTGGAGAAGGAGATAGAGATTAGGCGATTAGAGAACTGCGGAACATGCAATGGTACAGGAGCTAAACCAGGGACCAAATCATCCAGGTGTAGCACTTGTGGTGGTCAGGGCCGGGTTGTGTCATCAACAAGGACTCCATTAGGTATCTTTCAGCAGTCTATGACCTGCTCTTCTTGCAATGGGACTGGAGAAACTTCAACACCTTGCAGTACATGTTCTGGAGACGGGCGAGTGAGGAGAACAAAGCGTATAAGTCTCAAGGTCCCTGCTGGTGTGGATTCCGGTAGCCGTTTAAGGGTCCGAAATGAAGGCAATGCCGGAAGGCGTGGCGGTTCTCCCGGTGACCTCTTTGTTGTTCTTGAAGTTATTCCAGATCCTGTGCTTAAACGAGAAGACAACAACATTTTATACACATGTAAGGTGTCTTACATTGATGCTATCTTGGGGACTACAATTAAGGTTCCTACGGTAGACGGCATGGTGGATTTGAAAATCCCAGCTGGTACTCAACCAAGCTCAACACTTGTTATGGCTAAGAAAGGTGTTCCGGTGCTGAATAAAAAGAATATGAGGGGCGATCAATTGGTCCGAGTGCAAGTTGAAATCCCTAAAAGACTGAGCAGCGATGAGAAGAAACTTATTGAGGAACTTGCTGATTTAAGCAAAGGCAAGGCTGCCACCAGTAGGAGATAG 1323 0.4618 MAIVPFGSTPATQWGIRPQLLVRSTAMAKIASSTHNVTSRVSFMAARSSSIFSRDSLHALFDAGSSQTLHRRRGSRLIVRADADFYSTLGVSKNASKSEIKSAYRKLARNYHPDVNKEPGAEQKFKDISNAYEVLSDDEKRSIYDRYGEAGLKGQGMGMGDFTSPFDLFETLFEGMNSGGMGGRGSWNGAVDGEDEYYSLLLNFKEAVFGVEKEIEIRRLENCGTCNGTGAKPGTKSSRCSTCGGQGRVVSSTRTPLGIFQQSMTCSSCNGTGETSTPCSTCSGDGRVRRTKRISLKVPAGVDSGSRLRVRNEGNAGRRGGSPGDLFVVLEVIPDPVLKREDNNILYTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPSSTLVMAKKGVPVLNKKNMRGDQLVRVQVEIPKRLSSDEKKLIEELADLSKGKAATSRR* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0253 440 TIGRFAM DnaJ_bact: chaperone protein DnaJ 84 429 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lja6g0253 440 CDD DnaJ 84 137 IPR001623 -
Lja6g0253 440 Pfam DnaJ domain 84 145 IPR001623 -
Lja6g0253 440 Pfam DnaJ central domain 223 286 IPR001305 GO:0031072|GO:0051082
Lja6g0253 440 ProSiteProfiles Zinc finger CR-type profile. 210 291 IPR001305 GO:0031072|GO:0051082
Lja6g0253 440 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 32 440 - -
Lja6g0253 440 CDD DnaJ_zf 223 286 IPR001305 GO:0031072|GO:0051082
Lja6g0253 440 SUPERFAMILY HSP40/DnaJ peptide-binding domain 338 424 IPR008971 GO:0006457|GO:0051082
Lja6g0253 440 ProSiteProfiles dnaJ domain profile. 84 148 IPR001623 -
Lja6g0253 440 Gene3D DnaJ domain 81 185 IPR036869 -
Lja6g0253 440 PANTHER BNAA01G34580D PROTEIN 32 440 - -
Lja6g0253 440 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 210 289 IPR036410 -
Lja6g0253 440 ProSitePatterns Nt-dnaJ domain signature. 125 144 IPR018253 -
Lja6g0253 440 PRINTS DnaJ domain signature 86 104 IPR001623 -
Lja6g0253 440 PRINTS DnaJ domain signature 140 159 IPR001623 -
Lja6g0253 440 PRINTS DnaJ domain signature 104 119 IPR001623 -
Lja6g0253 440 PRINTS DnaJ domain signature 120 140 IPR001623 -
Lja6g0253 440 Pfam DnaJ C terminal domain 198 413 IPR002939 -
Lja6g0253 440 SUPERFAMILY HSP40/DnaJ peptide-binding domain 191 345 IPR008971 GO:0006457|GO:0051082
Lja6g0253 440 SMART dnaj_3 83 140 IPR001623 -
Lja6g0253 440 Gene3D - 333 440 - -
Lja6g0253 440 Gene3D - 193 328 - -
Lja6g0253 440 Hamap Chaperone protein DnaJ [dnaJ]. 81 436 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lja6g0253 440 SUPERFAMILY Chaperone J-domain 81 183 IPR036869 -
Lja6g0253 440 CDD DnaJ_C 194 416 - -
Lja6g0253 440 Gene3D - 223 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0253 Lja-Chr6 5399421 5406273 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0253 86 147 C2H2 Transcription Factor Family AT1G74250 42.647 3.10e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0253 K03686 - gmx:100786143 766.918