Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0252 ATGGCTTGCGTTCCTGAAAGCATTTGTGTTCATTTAACACTGGGTGCTTGCCCATGTGCCAAGAGCATCATAGCCTGTTCCTCCAACAATCCGGTTGAGGATGATGATTCAAGAGAAAAACAACAACATCGTAGAGCTGAAGAGATATCACATGCAGCAGCAGTAGTGGAATCCCCTGAATTGATGCTTTGTGATGATCCATGGAAGATAAAGAAGAAGCTGACACAGAGTGATCTTGGTTACTTGAGTAGACTCTTGATTCCCAAAGACTTGGCTGAGGACTTAGTGCTTCCTGTGTTGACTCGTGATGCCCAAATGCAGGTTTATACTGAAAACGGAACTAAAATCTTGATTTGGGACGTGGACACCCAATCCTCACATTACTTGGTTTTCAAGCTTTGGAATTCTTCTGGAAGTTATGTTTTCATTGACAATTGGACTAAAGATTTTGTCAAAAGAAGGGGTTTGAAGAAAGGTGATGAAATTAAGCTTCATTGGGATCCAAACAAGAACTGCTTCAATTTTTCAGTTCATTATTCGTCTAATTAG 549 0.4062 MACVPESICVHLTLGACPCAKSIIACSSNNPVEDDDSREKQQHRRAEEISHAAAVVESPELMLCDDPWKIKKKLTQSDLGYLSRLLIPKDLAEDLVLPVLTRDAQMQVYTENGTKILIWDVDTQSSHYLVFKLWNSSGSYVFIDNWTKDFVKRRGLKKGDEIKLHWDPNKNCFNFSVHYSSN* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0252 182 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 28 178 - -
Lja6g0252 182 CDD B3_DNA 68 178 IPR003340 GO:0003677
Lja6g0252 182 Gene3D - 67 180 IPR015300 -
Lja6g0252 182 Pfam B3 DNA binding domain 72 178 IPR003340 GO:0003677
Lja6g0252 182 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 28 178 - -
Lja6g0252 182 SUPERFAMILY DNA-binding pseudobarrel domain 66 178 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0252 Lja-Chr6 5397800 5398348 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0252 70 162 B3 DNA Binding Superfamily AT1G25560 37.234 2.35e-09 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja6g0252 B3 2.5e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0252 - - lja:Lj0g3v0332729.1 204.912