Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0250 ATGGCTTGCGTTCATTTGACACTGGGTGCTTGTCCATGTACCAAGAGCATCATAACCTGTTCCTCCAACAATACGGTTGAGGGTGATGATTCAAGAGAAAGACAACATTGGGGGTACTCCATTGAATTGATGCTTTGTGATGATCCATGGAATATAAAGAAGAAGCTGACAGAGAGTGATCTTGGTTACTTGAGTAGGCTCTTGATTAACAAAGATTTGACTGAGAATTTAGTGCTTCCTGTGTTGACTCCTGAGCAAAGAGTGGCTCTCTACCAAAACGGAACTAAAATCTTGATCTGGGACATGGACACCCAATCCCTACATTACTTGGTTTTCAAGTTTTGGGTTTCTTCAAGAAGTTATGTTTTCATTGACAACTGGACTAAAAATTTTGTGAAAAGAAGGGGCTTGAAGAAAGGGGATGAAATTAAACTTCATTGGAATCCATACAAGAAGTGCTTCAATTTTTCTGTTCAATATTCTAGTTAA 489 0.3885 MACVHLTLGACPCTKSIITCSSNNTVEGDDSRERQHWGYSIELMLCDDPWNIKKKLTESDLGYLSRLLINKDLTENLVLPVLTPEQRVALYQNGTKILIWDMDTQSLHYLVFKFWVSSRSYVFIDNWTKNFVKRRGLKKGDEIKLHWNPYKKCFNFSVQYSS* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0250 162 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 21 159 - -
Lja6g0250 162 Gene3D - 49 161 IPR015300 -
Lja6g0250 162 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 21 159 - -
Lja6g0250 162 CDD B3_DNA 50 158 IPR003340 GO:0003677
Lja6g0250 162 SUPERFAMILY DNA-binding pseudobarrel domain 48 152 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0250 Lja-Chr6 5363361 5363849 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0250 52 143 B3 DNA Binding Superfamily AT1G25560 31.579 6.07e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0250 - - lja:Lj0g3v0332729.1 249.21