Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0244 ATGGAAGAACGGTATGAGATTATTAAAGTTATTGGGTCTGGAAACTTTGGAGTAGCAAAGCTAATAAGGGAGAAACTGAGTGGTGTGCTCTACGCTGTTAAAGTCATTGAGAGAGGCCTCAAGATTGATGAGCATGTGCAAAGGGAGATTATAAATCACAGGTCCTTAAGGCATCCCAATATCATTAAATTTAAGGAGGTGCTGTGTACTCCAACTCATCTTGCCATAGTCATGGAATATGCAGCAGGAGGAGAACTATTTGGAAGAATATGCAATGCTGGTAGATTCTGTGAGGATGAGGCAAGATATTTCTTCCGGCAATTGATTTCTGGAGTCAGCTACTGCCATTCAATGGAAATTTGCCATAGAGATCTTAAGCTGGAAAACACGCTTTTAGATGGAAGCACAGCTCCACAACTCAAAATATGCGACTTTGGTTACTCTAAGTCATCTGTTCTGCACTCTCAGCCTAAATCTACTGTGGGAACCCCAGCATATATTGCACCAGAGGTCTTGTCAAGAAGAGAATATGATGGGAAGGTTGCTGATGTTTGGTCCTGTGGGGTTACCTTATATGTGATGCTAGTTGGAGGTTATCCTTTTGAAGATCCAGATGAACCACGAAACTTTAGAATCACACTCCAGCGAATTCTTGAGGTTCAATATTGCATTCCAGATTATGTTCGCGTCTCTAATGATTGTAGACACCTTCTGTCTCGAATATTTGTAGCCAACCCGGAGAAGAGAATCACAATCCCAGAAATCAAAATGCACCCATGGTTTCTTAATAACTTGCCAGTGGAATCAATGAATGAAGGGGGTGATATGTTGAGGAATGAGGTGAATGGTGTGGTGGATGATTCATCTCAGACCATTGAGGAAATACAGTCCATAATTCAAGAAGCAGGGAAGCAAGGCCAGGGTCCAAAAGTTGATGATGGGCAATTTGTTGGAGGCAGCATGGATCCTGATGAGATGGATGCATTCACTGATATTGATTATGATTATGTAGAAACAAGTGGTGATTTTGATTTTGTTTGTGAATTGTGA 1050 0.4133 MEERYEIIKVIGSGNFGVAKLIREKLSGVLYAVKVIERGLKIDEHVQREIINHRSLRHPNIIKFKEVLCTPTHLAIVMEYAAGGELFGRICNAGRFCEDEARYFFRQLISGVSYCHSMEICHRDLKLENTLLDGSTAPQLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLSRREYDGKVADVWSCGVTLYVMLVGGYPFEDPDEPRNFRITLQRILEVQYCIPDYVRVSNDCRHLLSRIFVANPEKRITIPEIKMHPWFLNNLPVESMNEGGDMLRNEVNGVVDDSSQTIEEIQSIIQEAGKQGQGPKVDDGQFVGGSMDPDEMDAFTDIDYDYVETSGDFDFVCEL* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0244 349 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Lja6g0244 349 ProSiteProfiles Protein kinase domain profile. 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0244 349 PANTHER SERINE/THREONINE KINASE 3 341 - -
Lja6g0244 349 CDD STKc_SnRK2 4 260 - -
Lja6g0244 349 Gene3D Phosphorylase Kinase; domain 1 1 80 - -
Lja6g0244 349 Pfam Protein kinase domain 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0244 349 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Lja6g0244 349 SUPERFAMILY Protein kinase-like (PK-like) 3 268 IPR011009 -
Lja6g0244 349 SMART serkin_6 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0244 349 Gene3D Transferase(Phosphotransferase) domain 1 81 268 - -
Lja6g0244 349 PANTHER SERINE/THREONINE-PROTEIN KINASE SAPK1 3 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0244 Lja-Chr6 5220292 5223934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0244 4 268 CBL-interacting serine-threonine protein kinases AT4G24400 42.336 2.75e-65 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Lja6g0244 Pkinase 1.1e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0244 K14498 - gmx:100807981 553.903