Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0229 ATGAGGAAATCCCCTCACCCCAGCGCCGCCCGGCGCTCCTCCGATTTCAACCGTCAACCACCGCACGTCAGGTGGTCTCCCCGCCCTGTCGTCCACCAGTCGAACCACCACCGGAAACCGGAATTCCAGTCCAACTCCCACCACCGACTTGACCGTCCTCCGGAGCGTAATCCCCCTCTCCGCGCGCCCAATTTCGTCATCAATCTCTGCTTCCTACGCCTCCGCCACGGCTTCGACTCCCTCCGCCGTGACGATGTGGAGTCTCTCATCAGCCGCTGCATCCCCCGGCCGGAGAATTTCACCTTCTACCCCTGCGATCGTGTTGCCGCCTCCCTCAATTTCCAGCAGTGGACGGACGCGCGCGACGCCTTCGTGTGTCTCTGGGAATCGCGCCTATCTGGCAACCATGATTTCACGCCGGAGCTCTCCTCGAAGGTGCTCTTACCCTCCGACAGGGTCGAGCTGGATGGTCGCCTCCGATCCCTCTTCGCGAGCCACGTGAAGGGGTTGATGGAGGGCAAGGAGGTGAAGCGATGGGTGGAGGAGCGAGAGAAGCTGTCCAAAGAGATTGCCCATGTTTCCAAATCGCTGCGGAACCCGTTGCCGATTGGCGTATTCCCACAGCAGCTAGAGAAGAAGAAAGGGCTCGAGGTTGAGAAGGATTTGGTTGAAAGAAGAATTAAGGAGTTCGAGTCCGCAATGCGGTGCATATTGCAGTATCTGGAGAACAATGACATGGAGGAAGGTGAAGGTTTTGTCCCTATATTCAGGTTTGATGGAAGTTTGGACTGGAAGCACATTCAGAGCCTCATCATCAGGGAACGCCGCAGGCTCGAAGAAGGGTTGCCCATTTATGCATACCGGAGGGATATTCTTCGTCAAATACATTATCAACAGATAATGGTATTGATTGGAGAGACCGGTTCGGGCAAGAGTACACAGTTGGTGCAGTTTCTTGCTGATTCAGGCATTGTTGGTGCTGAGTGCATTGTGTGCACCCAGCCTCGAAAGATTGCTGCCAAATCATTGACCCAAAGGGTCCAGGAAGAAAGCAGCGGGTGTTATGGTGACAACGCAATCAAGTGTTATTCCATGTTTTCATCCTCGCACAAGTTTGATTCCAGGATAACATTCATGACAGATCACTGTTTATTGCAGCACTGCATGAGTGATAAGAATTTGTTTGGGGTCTCGTGTATCGTAATTGATGAGGCTCATGAAAGGAGCTTAAATACTGATCTACTGTTGGCGCTGATAAAGGATTTACTTGGTAGGAGGGTTAAATTGCGGGTTATCATTATGTCTGCTACAGCTGATGCGAAGCAGCTATCTGATTACTTTTATTGTTGTGGAATTTTTGGTGTGCGTGGGAGAAAATTTCCTGTGGAGGTGAGATATGCTCCTTCTGACACAGGGTATTCTTCTTCTGCTGTTGTCGCCTCATATGTTTACGATGTCGTCAGAATGGCAACTGAGATTCACAAAAGAGAGAAAGAGGGAACTATTCTTGCCTTTTTGACCTCACAGGCAGAAGTGGAATGGGCCTGTGAAAACTTTGCAGCTCTCGCTGCTGTTGCTTTGCCCTTACATGGGAAACTTTCATCTGAGGAGCAATTTCATGTTTTCCAGAGCTTCCCTGGGAAAAGAAAAGTGATATTTTCAACAAATCTTGCAGAGACGTCCCTTACAATTCCTGGTGTTAAGTATGTGATAGATTCTGGGTTGGTAAAAGACAGTCGATTCGATCCTAGCAGTGGCATGAATGTACTTAAGGTTAGCTGGATCAGTAAGAGCTCTGCTGATCAGCGGGCTGGTCGGGCTGGGAGGACTGAGCCTGGTAAGTGTTATAGGCTGTATTCAGAAGCTGACTATCAGTCTATGGAACTAAATCAAGAACCGGAGATTCGAAGAGTTCATCTCGGTGTAGCAGTTTTGAGAATCCTTGCTTTAGGAGTTAAAAATGTGCAGGATTTTGATTTTGTGGATGCTCCAAGTCCTAGCTCTATTGAGATGGCAATCAGGAATCTAATTCAATTAGATGTGATTAAACTGAACAATAATGTTCATGAATTAACTCGTGAAGGTAGAGACTTGGTAAAATTGGGGATCGAACCAAGACTTGGTAAACTTATTCTTGGCTGTCGGAAACATAATTTGTTTAGAGAAGGCATTGCCCTTGCTTCTTTGATGACCAATGCCAGTAGCATATTTTGCAGAGTTGGTAATGAAGGTGATAAACAGAGATCTGATTGCCACAAAGTGCAATTTTGCCATCGTGATGGTGACCTCTTTACTCTTCTGTCTGTGTACATGGAATGGGAAGCTTTGCCTACAGAGAGGAAGAATAAATGGTGTTGGGAAAACAGCATCAATGCCAAATCTATGAGGAGATGCCATGACACATATTTGGAGTTAGAATCTTGTCTTGAGCGTGAACTTAGGTTTTTGACTCCATCTAACTGGCGATGGGACCCTTATAAACCCTCCTTTCATGATACGAATATGAAAAAGGTTATACTGTCCTCACTTGCTGAGAATGTGGCCACGTACTCTGGTTGCAATCAACTTGGTTATGAAGTAGCACAAACTGGGAGATGTGTTCAACTACATCCGTCTTGTTCCTTGCTTGTATTTGCTGAGAGACCTGGTTGGGTGGTTTTTGGTGAGCTTCTTTCAGTTTCTAATGAATATTTGGTCTGTGTAAGTGCTTTTGACTTTCAATCGTTGCATGGCCTTCACCCTCCTCCCTTGTTTGATGTATCCAAGATGGAAGAACGGAAGTTGCAAATGAAGACATTGACTGGTTTTGGCACTATTCTTCTCAGGAGATTTTGTGGGAAAGCCAACAGTAATTTGCTTGGTCTTGTTTCACGGATTAGGAAAGCTTGTATGGATGAACGTATCTTCATTCAAGTGAATGTTGACCAGCATGATGTTCAGTTATATGCCACTTCACATAATATGAATACAGCCCTTAGGTGGGTTGATGATGTTTTAGAATGCGAGAAAAAATGGCTACGTGCTGAATGTATGGAAAAATGTTTGTATCATGGGTCTGGTTTCTCACCACCTGTAGCTTTATTCGGGTCTGGTGCTGGGATAAAGCATTTGGAACTTGAGAAACGTTCCTTGAGTGTTGACGTGTATCACCCAAACATAAGTGCAATTGACGACAAAGAGCTCTTGATGTTTTTTGAGAAGAATACTTCATGTTGTATCTGTTCTGTGCACAAGTTCACAGGCATGGCAAAGGATGTTGGGGATGGAGAAAAGTGGGGCAGGATAACATTTCTTTCCCCTGATGCTGCCAAAAGAGCTGCTGAGTTGGATGGAGAGGAGTTCTCTGGCTCGTCCTTGAAAATTGTTCCTTCACAATCTGCTACGGGAGGGAGTAAACCATTTTCATTTCCTGCTGTAAAAGCAAAAATTTACTGGCCTCGTAGGCTTAGCAAAGGAGTTGCCATAGTTAAATGTGATATACAGGATGTCAGATTCATCCTTTCTGAGTTTTATAACCTTGCTATTGGAGGAAGGTATGTTCGATGTCAAATCAGCAACAAGTGTGCGGACAGTGTTGTGATAAGTGGGTTTGCCAAAGAGCTTTCGGAAGGTGAAGTTTTTGATGTAATAAGAACTGCTACAAGTAGAAGGATTTTGGATTTTTTCTTGGTGAGAGGAGAGGCAGTTGGAAATCCACCATGCAGTGCTTGTGAAGAGGCACTTCTTAAAGAAATTTCCCCCTTAATGCCCAAAAGGAACCCCCACATTGGCTCTTGTCGAGTTCAGGTGTTTCCACCTGAGCAAAAGGATGCTTTCATGAGAGCTTTAATCACTTTCGATGGAAGATTACATTTAGAGGCAGCAAAAGCTTTGGAGACAATTGAAGGAAAGATGTTGCCCGGATTTCTTTCATGGCAGAAGATAAATTGCCAGCAGTTGTTCAATAGCTCCTTGACATTTCCTCATCCAGTGTATCGTGTGATTAAGGAACAACTGGAAAAAGTACTTGCAAGCTTCAACAATTTAAAGGGTCTTGAGTGGAACCTAGACAAGATTGCTAATGGTTCCCACCGAGTGAGGATAACAGCTAATGCCACAAAGACAGTGGCAGAAGTTAGGAGACCTCTGGAAGAACTTTCCAGAGGGAAAACAATAGAGCACAACAGCCTCACCCCTGCAGTTCTAGAGCTCATGTGTTCCAGAGACGGCTGTAGTATTAGAAGCTCAATACAGCAAGAGACAGGAACTTACATTCTTTTTGACAGGCACAACCAGAATTTACGGATTTTTGGTTCTCCGGACAAGATTGATCTGGCTCAGCAGAAGCTGATTCAATCCCTACTCTCTCTCCACGAAGGAAGGCAGTTGGTAATCCATCTGAGAGGGAAGGATCTACCTCCGGACTTAATGAAGCAAGTGGTTAAGAATTTTGGGCCAGATCTCCATGGACTAAAGCAGAAGGTACCTGGGGTAGATCTTAACCTCAACACTCGCAGCCAACAAATATTTCTTCATGGTAACAAGGAGTTGAAACCAAGAGTAGAGGAAACAATTCTTGAGATTGCACGTTCAAGTAATGATTTGGTCAAGAGACATGACACCGGACCTAGCTGCCCAATTTGCTTATGTGAAGTTGAGGATGGATACCAACTTGAAGGCTGTGGTCATTTGTTCTGCCGTTTGTGTCTCGTGGAGCAATGTGAATCAGCTATAAAAAACCAAGGAATTTTCCCAATATGCTGTTCTCAGGAGGGCTGTGGAGATCCTATTCTGCTTACAGATTTGAGATCTTTCTTATTAAATGATAAACTGGAGGAACTTTTCAGGGCTTCTTTGGGTGCTTTTGTGGTTGCGAGTGGGGGAACTTACCGGTTCTGCCCCTCTCCTGACTGCCCCTCAATTTATCGAGTTGCGGATCCGGACACCGGTGGTGAGCCCTTTGTTTGTGGGGCGTGTTATTCAGAGACTTGTACCAGGTGCCACTTAGAGTATCATCCATACCTTTCATGCGAGAGATACAAAGAATTCAAGCAAGATCCAGACTTATCTCTGAAGGAGTGGTGCAAAGGGAAAGAACAAGTTAAGAGCTGTTCGGCCTGCGGGTATGTAATTGAGAAGGTAGATGGGTGCAATCACGTCGAGTGCAAGTGTGGAAAGCATGTCTGCTGGGTTTGCTTGGAGATCTTCATGAGCAGTGATGAATGTTATAACCATTTAAGAACTATACACTTGGCCATCATCTAG 5244 0.4539 MRKSPHPSAARRSSDFNRQPPHVRWSPRPVVHQSNHHRKPEFQSNSHHRLDRPPERNPPLRAPNFVINLCFLRLRHGFDSLRRDDVESLISRCIPRPENFTFYPCDRVAASLNFQQWTDARDAFVCLWESRLSGNHDFTPELSSKVLLPSDRVELDGRLRSLFASHVKGLMEGKEVKRWVEEREKLSKEIAHVSKSLRNPLPIGVFPQQLEKKKGLEVEKDLVERRIKEFESAMRCILQYLENNDMEEGEGFVPIFRFDGSLDWKHIQSLIIRERRRLEEGLPIYAYRRDILRQIHYQQIMVLIGETGSGKSTQLVQFLADSGIVGAECIVCTQPRKIAAKSLTQRVQEESSGCYGDNAIKCYSMFSSSHKFDSRITFMTDHCLLQHCMSDKNLFGVSCIVIDEAHERSLNTDLLLALIKDLLGRRVKLRVIIMSATADAKQLSDYFYCCGIFGVRGRKFPVEVRYAPSDTGYSSSAVVASYVYDVVRMATEIHKREKEGTILAFLTSQAEVEWACENFAALAAVALPLHGKLSSEEQFHVFQSFPGKRKVIFSTNLAETSLTIPGVKYVIDSGLVKDSRFDPSSGMNVLKVSWISKSSADQRAGRAGRTEPGKCYRLYSEADYQSMELNQEPEIRRVHLGVAVLRILALGVKNVQDFDFVDAPSPSSIEMAIRNLIQLDVIKLNNNVHELTREGRDLVKLGIEPRLGKLILGCRKHNLFREGIALASLMTNASSIFCRVGNEGDKQRSDCHKVQFCHRDGDLFTLLSVYMEWEALPTERKNKWCWENSINAKSMRRCHDTYLELESCLERELRFLTPSNWRWDPYKPSFHDTNMKKVILSSLAENVATYSGCNQLGYEVAQTGRCVQLHPSCSLLVFAERPGWVVFGELLSVSNEYLVCVSAFDFQSLHGLHPPPLFDVSKMEERKLQMKTLTGFGTILLRRFCGKANSNLLGLVSRIRKACMDERIFIQVNVDQHDVQLYATSHNMNTALRWVDDVLECEKKWLRAECMEKCLYHGSGFSPPVALFGSGAGIKHLELEKRSLSVDVYHPNISAIDDKELLMFFEKNTSCCICSVHKFTGMAKDVGDGEKWGRITFLSPDAAKRAAELDGEEFSGSSLKIVPSQSATGGSKPFSFPAVKAKIYWPRRLSKGVAIVKCDIQDVRFILSEFYNLAIGGRYVRCQISNKCADSVVISGFAKELSEGEVFDVIRTATSRRILDFFLVRGEAVGNPPCSACEEALLKEISPLMPKRNPHIGSCRVQVFPPEQKDAFMRALITFDGRLHLEAAKALETIEGKMLPGFLSWQKINCQQLFNSSLTFPHPVYRVIKEQLEKVLASFNNLKGLEWNLDKIANGSHRVRITANATKTVAEVRRPLEELSRGKTIEHNSLTPAVLELMCSRDGCSIRSSIQQETGTYILFDRHNQNLRIFGSPDKIDLAQQKLIQSLLSLHEGRQLVIHLRGKDLPPDLMKQVVKNFGPDLHGLKQKVPGVDLNLNTRSQQIFLHGNKELKPRVEETILEIARSSNDLVKRHDTGPSCPICLCEVEDGYQLEGCGHLFCRLCLVEQCESAIKNQGIFPICCSQEGCGDPILLTDLRSFLLNDKLEELFRASLGAFVVASGGTYRFCPSPDCPSIYRVADPDTGGEPFVCGACYSETCTRCHLEYHPYLSCERYKEFKQDPDLSLKEWCKGKEQVKSCSACGYVIEKVDGCNHVECKCGKHVCWVCLEIFMSSDECYNHLRTIHLAII* 1748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0229 1747 Pfam DEAD/DEAH box helicase 290 443 IPR011545 GO:0003676|GO:0005524
Lja6g0229 1747 ProSitePatterns Zinc finger C2H2 type domain signature. 1722 1743 IPR013087 -
Lja6g0229 1747 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 485 651 IPR001650 -
Lja6g0229 1747 ProSiteProfiles Zinc finger RING-type profile. 1538 1580 IPR001841 -
Lja6g0229 1747 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 292 456 IPR014001 -
Lja6g0229 1747 Pfam IBR domain, a half RING-finger domain 1617 1670 IPR002867 -
Lja6g0229 1747 Gene3D - 265 458 IPR027417 -
Lja6g0229 1747 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 277 789 IPR027417 -
Lja6g0229 1747 SMART ibrneu5 1671 1735 IPR002867 -
Lja6g0229 1747 SMART ibrneu5 1606 1670 IPR002867 -
Lja6g0229 1747 SUPERFAMILY RING/U-box 1537 1601 - -
Lja6g0229 1747 SUPERFAMILY RING/U-box 1692 1740 - -
Lja6g0229 1747 PANTHER ATP-DEPENDENT RNA HELICASE 108 1498 - -
Lja6g0229 1747 SUPERFAMILY RING/U-box 1617 1676 - -
Lja6g0229 1747 SMART helicmild6 513 611 IPR001650 -
Lja6g0229 1747 Pfam Helicase conserved C-terminal domain 492 610 IPR001650 -
Lja6g0229 1747 CDD SF2_C_RHA 460 619 - -
Lja6g0229 1747 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 1574 1663 - -
Lja6g0229 1747 Pfam Helicase associated domain (HA2) 672 766 IPR007502 GO:0004386
Lja6g0229 1747 ProSiteProfiles TRIAD supradomain profile. 1534 1742 IPR044066 -
Lja6g0229 1747 SMART ha2_5 671 767 IPR007502 GO:0004386
Lja6g0229 1747 MobiDBLite consensus disorder prediction 34 56 - -
Lja6g0229 1747 Gene3D - 633 676 IPR042035 -
Lja6g0229 1747 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 398 407 IPR002464 -
Lja6g0229 1747 Gene3D - 1665 1744 - -
Lja6g0229 1747 SMART ultradead3 280 465 IPR014001 -
Lja6g0229 1747 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1534 1613 IPR013083 -
Lja6g0229 1747 CDD DEXHc_RHA-like 299 455 - -
Lja6g0229 1747 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 108 1498 - -
Lja6g0229 1747 PANTHER ATP-DEPENDENT RNA HELICASE 1574 1663 - -
Lja6g0229 1747 MobiDBLite consensus disorder prediction 1 59 - -
Lja6g0229 1747 Gene3D - 459 630 IPR027417 -
Lja6g0229 1747 Coils Coil 213 233 - -
Lja6g0229 1747 ProSitePatterns Zinc finger RING-type signature. 1554 1563 IPR017907 -
Lja6g0229 1747 CDD KH-I 1401 1443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0229 Lja-Chr6 4779240 4786187 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0229 1553 1729 C3H Transcription Factor Family AT2G31770 25.946 6.35e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0229 K12818 - gmx:100810008 2622.81