Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0227 ATGTCATCCTCCTCTTCAATCTTCTCATTCTCTCTTGTTCTCATTCTACTTCTCCACGTTCAACCTTCATCACCATTCTCCCTCTCCGTCGAGAATCACCAAGACGATATCATACTCTCACCCAACCGCGCATTCACCGCAGGCTTCTACCCCGTCGGCGAAAACGCCTACTGCTTCGCCATCTGGTTCACCCAACAACACCGCCAATCCGCCACCGTCGTCTGGATCGCCAACCGCGACCAACCCGTCAACGGAAAACGCTCCTCCCTCTCCCTTCTCAAAACCGGCAACCTCATCCTAACCGACGCCGACCAGTTCACCGTCTGGTCCACCAGCACCGCCTCGTTAAACTCGCCGGATGTGGAACTTCTCGACACCGGTAACCTCGTCCTCCGTGACCGCCGCCGTAATGAAACCAGCTCCATCCTCTGGCAGAGCTTCGATTTTCCGACGGATACTCTGCTTCCAGAACAGAGCCTCACCAGACACATGAAGCTCGTTTCTGCCAGAAGCGCCGGTAACTTCTCCTCCGGATTCTACCAGCTTTTCTTCGACGACGATAACATTCTCCGTCTTCTCTACGAAGGACCGAGAATCTCCAGCGTTTACTGGCCGGATCCGTGGCTGGTGAGCAACAGCGGCGGCAGAACCACCTACAACAGCACCAGAGTCGCGAAACTGGATCCATTGGGAAGATTTCACTCCTCCGATAACTTCACCATGAAAGCGTGCGACTACGGCACCGTCCTCCAGCGGCGAGTCACCCTCGACCACGATGGTAACGTCCGTGTCTACAGCCGCAACGACGGTGAATCAGAGTGGTCGGTTTCAGCGCAGATTCAGCAAGAACCGTGCTTCATTCACGGGATCTGTGGTCCTAACAGCATTTGCAGTTACGATACCAGATCTGGGAGAAAATGCTCTTGCATTCCAGGGTATAGCTGGATCAACAATCAGGATTGGACACAAGGTTGCAAACCGAATTTCCAACGCTCTTGCAACAGATCTGAAGCAGATTATCAGATCCAGTTTATACCTCATGTTGATTTCTACGGTTACGATCTCGGATCGTATCCGAATCACACTTATCAACAATGCGTGGATCTGTGTTTGGGATTGTGCGAGTGCATTGGGTTTCAGCACACGTTTGCGATTGAAAATGGTTTGTTTTGGTGCTACCCCAAGACGCAGTTGCTGAATGGGCACAGATCAGAGAGTTTCATTGGATCTTTCTTTGTGCCGTTGCCGAGAAGCACTGATAACAGCCTCAATGAGCGTAACAGCTTGGTTTGTTCGGGAAATGTGGCGGCGGAGCAGCTTGAGAGAGCGTATGTGAAAGGGAAGGACAATGGATCTGTGAAATTTGTGCTCTGGTTTGCGAGTGGTATTGGAGGATTTGAGCTTGTGTGCTTCCTTCTGGTGTGGTGTTTCTTGTTTAGGGATAGCGGCGGAGACGAACAAGGTTATGTTCTTGCGGCCGCAACAGGGTTTCAGAGATTCGGTTACTCTGAGCTGAAGAAAGCTACCAAAGGTTTCAGCCAAGAGATTGGAAGGGGTGCCGGAGGAACTGTGTATAAGGGTGTGTTATCGGATAATCGCGTTGCGGCGATTAAGGTGTTGCACGCTGCGAATCAAGGAGAGAGTGAGTTCCTTGCTGAAGTGGGATTCATTGGAAGGCTTAACCACATGAACTTAATTGGAATGTGGGGGTATTGTGCCGAGGGGAAGCACAGGATTTTGGTGTATGAGTACATGGAAAACGGTACATTAGCTAAGAATTTGTCATCAAATGCACTTGATTGGAGTAAGAGGTATAACATTGCTCTGGGAACGGCAAGGGGTTTGGCCTATCTACATGAAGAATGCTTGGAGTGGATTTTGCATTGTGACATAAAGCCCCAAAACATACTTCTTGACGCTAATTACCAACCCACGGTTGCGGATTTTGGCTTGTCTAAGCTGCTGCAAAGGGATGATCTGAACAATTCGAGCTTCTCAAGGATAAGAGGAACAAGAGGTTACATGGCACCCGAATGGGTTTTCAACTTGCCCATTACTTCGAAGGTGGATGTTTATAGCTATGGAATTGTTGTCCTGGAGATGATAACCGGAAAGAGCCCAATGACGGGTATCATTCAAATCTTAGAGGGAGCAGAACCACATCATGAGAGGTTGGTAACATGGGTGAGGGAGAAGAAGAGGAGTGGAGCAAAAGGGGCATCTTGGGTGGAACAAGTTGTTGATCCTGCATTGGGGAAAAATTATGACATGAATAAAATGGAGATTTTGGCAACGGTGGCTTTGGAGTGTGTCGCGGAAGACAAGGATATGAGACCCAGCATGAGTCAAGTTTATCAGAGGCTCCAGGCCGGGTCTTGA 2379 0.496 MSSSSSIFSFSLVLILLLHVQPSSPFSLSVENHQDDIILSPNRAFTAGFYPVGENAYCFAIWFTQQHRQSATVVWIANRDQPVNGKRSSLSLLKTGNLILTDADQFTVWSTSTASLNSPDVELLDTGNLVLRDRRRNETSSILWQSFDFPTDTLLPEQSLTRHMKLVSARSAGNFSSGFYQLFFDDDNILRLLYEGPRISSVYWPDPWLVSNSGGRTTYNSTRVAKLDPLGRFHSSDNFTMKACDYGTVLQRRVTLDHDGNVRVYSRNDGESEWSVSAQIQQEPCFIHGICGPNSICSYDTRSGRKCSCIPGYSWINNQDWTQGCKPNFQRSCNRSEADYQIQFIPHVDFYGYDLGSYPNHTYQQCVDLCLGLCECIGFQHTFAIENGLFWCYPKTQLLNGHRSESFIGSFFVPLPRSTDNSLNERNSLVCSGNVAAEQLERAYVKGKDNGSVKFVLWFASGIGGFELVCFLLVWCFLFRDSGGDEQGYVLAAATGFQRFGYSELKKATKGFSQEIGRGAGGTVYKGVLSDNRVAAIKVLHAANQGESEFLAEVGFIGRLNHMNLIGMWGYCAEGKHRILVYEYMENGTLAKNLSSNALDWSKRYNIALGTARGLAYLHEECLEWILHCDIKPQNILLDANYQPTVADFGLSKLLQRDDLNNSSFSRIRGTRGYMAPEWVFNLPITSKVDVYSYGIVVLEMITGKSPMTGIIQILEGAEPHHERLVTWVREKKRSGAKGASWVEQVVDPALGKNYDMNKMEILATVALECVAEDKDMRPSMSQVYQRLQAGS* 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0227 792 ProSiteProfiles Bulb-type lectin domain profile. 23 144 IPR001480 -
Lja6g0227 792 Gene3D Phosphorylase Kinase; domain 1 484 584 - -
Lja6g0227 792 PIRSF SRK 1 792 IPR024171 GO:0004674
Lja6g0227 792 Gene3D - 29 148 IPR036426 -
Lja6g0227 792 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 205 IPR036426 -
Lja6g0227 792 Pfam Protein kinase domain 513 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0227 792 PANTHER SERINE/THREONINE KINASE, PLANT-TYPE PROTEIN 7 790 - -
Lja6g0227 792 CDD STKc_IRAK 516 789 - -
Lja6g0227 792 ProSitePatterns Serine/Threonine protein kinases active-site signature. 626 638 IPR008271 GO:0004672|GO:0006468
Lja6g0227 792 ProSitePatterns Protein kinases ATP-binding region signature. 516 538 IPR017441 GO:0005524
Lja6g0227 792 SUPERFAMILY Protein kinase-like (PK-like) 494 788 IPR011009 -
Lja6g0227 792 CDD B_lectin 38 150 IPR001480 -
Lja6g0227 792 ProSiteProfiles Protein kinase domain profile. 510 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0227 792 Pfam D-mannose binding lectin 72 165 IPR001480 -
Lja6g0227 792 SMART serkin_6 510 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0227 792 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 7 790 - -
Lja6g0227 792 Pfam S-locus glycoprotein domain 249 314 IPR000858 GO:0048544
Lja6g0227 792 Gene3D Transferase(Phosphotransferase) domain 1 585 792 - -
Lja6g0227 792 SMART blect_4 29 150 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0227 Lja-Chr6 4671424 4674202 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0227 500 788 Trihelix Transcription Factor Family AT5G38560 43.243 1.08e-67 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Lja6g0227 Pkinase 5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0227 - - gmx:100806357 1099.73