Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0224 ATGGAATGTTGGCCCCACATGGTGGTCCTTGTGATATCATCATCATCAATGTTGCAATATTCAGGTGTTGTTGATGCACAAGGAGCCATAACAACAAACCCTGCTCCTTTAGGAATCACATTCACCACCTTCAAGGACAACCTCAAGGCAACAATGAGTATCATGCTGCTAGCCTTCTTCTCCGTCTTCCTCATCATGGGCTTCATCTCCCTCTACCTCCGCCACTGCTCCTACGCCTACGGCGGCGGCGCCCGAAGCCCAATCACCACCGCGGCTGACCTCTGCTCCCGTGGCATCAACCGCCAGCTCATCGACAAGTGCCCTGTCCTCGCCGTGAAGGACCTCAGAATCGGAGAGGGTGGCAGCTGCATCGAGTGCGCCGTGTGCCTCGCCGAGTTCCAAGACGGCGACAGCATCCGCTTGCTCCCGAAATGCCACCACGTTTTCCACCCTGATTGCATCGATTCGTGGTTGCTCTCTCACATGAGCTGTCCCGTTTGTCGCGCCACGCTCACCTCCGATGATGTTCCCGACGACATTGTCATCATCCCCATCTCCGACACCACCACAACCACCACCGCCACCGCCACGGAACCTGAACCACCGGCTAACGGAAGTAGCAGTAGCACTATTAGTAGCAGCGTTACGGTTACAGAGATAGAGGAAGTTGTAACGGCACCTGAAGAAGAAGGTGAAGGTGAGATCAGCAATAGTATTGTTTTTCTTGCACGCGAATCGAGAATGATGGTGAGGTCACATTCAACTGGTCACTCTTTGGTGGGGCCCGAGGAGAAGGTTAAGGTGTGGGACAGGTACATGTTAAGGTTGCCAGAGCATGTGAGGAGGAAACGGATTCTTCGTGAGAATGCGGTTTTTCCGGGTGAGTGGAGTGCGAAGAGAGCATGGGAAGGAGGTGGTGGAATTGGTAATAACAATGTTGAACGGTGGTGGTGGTCTTTGTCGATGACTCCACCTTTGGGATTTCGTTCGGGTGGCGGCACTAGTGGAGGCGATTGTAACGGTGGTAATTTTTTAGGGGCATGTTGGACGCCAGTTAGAGTATCTCCAATTCAAGGTTCTTAG 1083 0.5309 MECWPHMVVLVISSSSMLQYSGVVDAQGAITTNPAPLGITFTTFKDNLKATMSIMLLAFFSVFLIMGFISLYLRHCSYAYGGGARSPITTAADLCSRGINRQLIDKCPVLAVKDLRIGEGGSCIECAVCLAEFQDGDSIRLLPKCHHVFHPDCIDSWLLSHMSCPVCRATLTSDDVPDDIVIIPISDTTTTTTATATEPEPPANGSSSSTISSSVTVTEIEEVVTAPEEEGEGEISNSIVFLARESRMMVRSHSTGHSLVGPEEKVKVWDRYMLRLPEHVRRKRILRENAVFPGEWSAKRAWEGGGGIGNNNVERWWWSLSMTPPLGFRSGGGTSGGDCNGGNFLGACWTPVRVSPIQGS* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0224 360 PANTHER RING FINGER DOMAIN-CONTAINING 8 287 - -
Lja6g0224 360 PANTHER RING-H2 FINGER PROTEIN ATL11 8 287 - -
Lja6g0224 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 173 IPR013083 -
Lja6g0224 360 CDD mRING-H2-C3H2C2D_ZSWM2 125 168 - -
Lja6g0224 360 Pfam Ring finger domain 125 168 IPR001841 -
Lja6g0224 360 SUPERFAMILY RING/U-box 100 174 - -
Lja6g0224 360 ProSiteProfiles Zinc finger RING-type profile. 126 168 IPR001841 -
Lja6g0224 360 MobiDBLite consensus disorder prediction 191 216 - -
Lja6g0224 360 SMART ring_2 126 167 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0224 Lja-Chr6 4550880 4552212 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0224 7 330 Rapid Response to Elicitors AT3G05200 31.429 3.25e-41 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0224 K10664 - fve:101295180 155.606