Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0219 ATGGGTCTGTCAAACTTCCCTTGTCCATCAGAAGGGGTGCTACCTTTGCTTGTGATGAACACTGTTCTATCAGTAGCTCTGTTGAAGAACATGTTTAGATCCATGCTCCAAGTAATATTCGGTGCCAATAATTCCTATTATCATTATTCTCCAGATATTGATGATGAACAAGAGAGTACTTCACAGGAAAAAGGAAGGAGGGTGTCAATAACACACTACAAGTCCTTGTGCCGCCGCAACAGGTCCATTACCACAGAGTGCTGCTGCTGTGTGTGTCTGTGTGGATTTGAAGCTAATCAGGAGGTGAGTGAATTGCCTTGTAAGCATTTCTTCCATAAAGGCTGCTTGGAGAAATGGTTTCACAACAAACACAACACTTGCCCTTTATGTCGTTCCATAGAATAA 405 0.4247 MGLSNFPCPSEGVLPLLVMNTVLSVALLKNMFRSMLQVIFGANNSYYHYSPDIDDEQESTSQEKGRRVSITHYKSLCRRNRSITTECCCCVCLCGFEANQEVSELPCKHFFHKGCLEKWFHNKHNTCPLCRSIE* 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0219 134 Pfam Ring finger domain 89 131 IPR001841 -
Lja6g0219 134 SUPERFAMILY RING/U-box 74 132 - -
Lja6g0219 134 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 134 IPR013083 -
Lja6g0219 134 PANTHER - 1 133 IPR044249 -
Lja6g0219 134 SMART ring_2 89 130 IPR001841 -
Lja6g0219 134 SMART ringv_2 88 131 IPR011016 GO:0008270
Lja6g0219 134 ProSiteProfiles Zinc finger RING-type profile. 89 131 IPR001841 -
Lja6g0219 134 PANTHER F21J9.24-RELATED 1 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0219 Lja-Chr6 4394464 4395090 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0219 1 132 C3H Transcription Factor Family AT2G04240 33.784 1.14e-22 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0219 K16285 - gmx:100811790 174.866