Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0212 ATGATAAGGGAAGAAGGGAAGAACATGGAGAAACCCTCTGCCGGTGTGGTGGGTCGGAAAACATATTCTCGCTCTGTTTCATGGACTGATGGATCACCGAGTCGCCGGAAGCCACCACCGCCGTCACAACCACCTTCTTCAAACTCAAGTAACAAACCACCACGACCGTTTCTACCACCGCTTCAGCCACTCTCAATCAGCAAGCGCAGCGCGGAGGAATGGCCTAGTGCAGGATCTGACGATCTCGGAGTTTGGCCTCTTCCACAAACCCCAAGAGGGACCTCCATCAATGAATCCACCAATGATTTTCAGTTCAAGAGGGACAAGTTGGCCTTCTTCGACAAAGAGTGTTCCAGAATCGCCGACCATGTCTACTTAGGGAGCGACACGGTGGCCAAGAACCACCAACTCCTCCGCCAAAACGGAATCACCCACGTCCTCAACTGTGTCGGGTTCGTTTGTCCGGAGTATTTCAAGAGCGATTTTGTCTACAAGACGCTGTGGTTGCACGACAGCCCCACTGAGGACATCACGAGTATCCTCTATGATGTGTTTGATTACTTTGAGGATGTTCGAGAGCAAGGTGGGCGTGTTCTTGTTCATTGCTGCCAGGGGATTTCTCGATCAACTGCTTTGGTGATTGCTTACCTCATGTGGAGGAAGGGGCAGAGCTTTGAAGATGCGTTTCAGTTTGTGAAGAGTGCGAGGGCTGTGACTAATCCCAACATGGGTTTTGCTTGTCAACTCTTGCAGTGTCAGAAACGGGTGCACGCTATGCCGGCGAGTCCGAATTCGGTTGTTAGGATGTACCGGATGGCTCCTCACTCGCCTTATGACCCTCTTCATCTAGTTCCTAAAATGGTGAACCAGCCTGGTGCACGAGCTCTTGACTCTCGCGGGGCCTTTATTGTCCATGTTCCGTCGGCTATTTATGTTTGGAATGGGAAACATAGTAACTCGGTGATGGCGTGCAATGCGAGGAGTGCGGCGTTTCAGGTCATCCGTTATGAGAGGGCGAACGGTCCAATTCAGAGCATCCATGAAGATGAAGAACCACCTGAGTTCTGGGTTGCTCTGTCTGATGAGCAACGATTATCGGGTGGTCTTGACAAAGCGGAGGCCATGGAGGAAGAACCAGTGTTGCCTTCTGAAAGCATGGAGATTGATCATAGAAAAGTTGATGCATATGATTTGGATTTTGAGATTTTCGACAAGGCGCTTTCTGGTGGGGTTGTTCCACCCTTTTCTGTGGCTAATGTTGAATCAGAAACTTGCCTTCCGGCTAGAGAACATGGCTGGGGAATACTGAGGCAGAGGTTTGCCAGTGGTGTTATGAAAGATTTGCTCACATCCCCTAAATGGACCTGTGATGCAATCTCATCCAGTGATCATCAATCCAGAGTTGTCGTGGAAGAAGAAAACCAAGATCTTGTAGCTGGCCCTTTGTCTCCATCATCATCAAGTCAACCATGTGGTTCACCAGATTCCTTTGAATGTTCTCCAGATCACAACTTAGGAAGTCCTAAAGATGTCGTTGAAGTCACGGATTTCTCTGTTCTTGGTGTTGCTTCTTCACTACCATTATCCCCCGCCGGCATATCAAGCCCTTTTCCTTCTTTTCTAAGCAGCAACAACAACAGCCCCAAATTCTATTCCAAGTCACCAACACTTTCGCCTTCAAGTTCTGACTACGCAAGTTCTTTCACATTCTCACCTTCATCTACCAATTGGTCGGACTTATCATTCGTCTCTTCTCGGCAGCCATCACCATCTGGAATAGAACCAACTGAACCATTCCATGTTAAAGACCTATTTTTCTCAGGAACTTCATCTTTATTTCACAAAGAAGTGGTCTCTTCACCTTCAGAATCATTTTCCGTTAATCACACCTTGGGAGGGGCAAACTCCAATTTGCCACTAAAAGGGTCTTCTCTCTCCATCGCAGAGCGCAGAGGGAGCAATCCACCACCGCGGATGTTGCTATCCTCGGTCAATGAATCCTCTCATGTCCACAGGAACCTGGAGGACCGCCCCTAA 2037 0.487 MIREEGKNMEKPSAGVVGRKTYSRSVSWTDGSPSRRKPPPPSQPPSSNSSNKPPRPFLPPLQPLSISKRSAEEWPSAGSDDLGVWPLPQTPRGTSINESTNDFQFKRDKLAFFDKECSRIADHVYLGSDTVAKNHQLLRQNGITHVLNCVGFVCPEYFKSDFVYKTLWLHDSPTEDITSILYDVFDYFEDVREQGGRVLVHCCQGISRSTALVIAYLMWRKGQSFEDAFQFVKSARAVTNPNMGFACQLLQCQKRVHAMPASPNSVVRMYRMAPHSPYDPLHLVPKMVNQPGARALDSRGAFIVHVPSAIYVWNGKHSNSVMACNARSAAFQVIRYERANGPIQSIHEDEEPPEFWVALSDEQRLSGGLDKAEAMEEEPVLPSESMEIDHRKVDAYDLDFEIFDKALSGGVVPPFSVANVESETCLPAREHGWGILRQRFASGVMKDLLTSPKWTCDAISSSDHQSRVVVEEENQDLVAGPLSPSSSSQPCGSPDSFECSPDHNLGSPKDVVEVTDFSVLGVASSLPLSPAGISSPFPSFLSSNNNSPKFYSKSPTLSPSSSDYASSFTFSPSSTNWSDLSFVSSRQPSPSGIEPTEPFHVKDLFFSGTSSLFHKEVVSSPSESFSVNHTLGGANSNLPLKGSSLSIAERRGSNPPPRMLLSSVNESSHVHRNLEDRP* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0212 678 MobiDBLite consensus disorder prediction 1 99 - -
Lja6g0212 678 PANTHER MKPA PROTEIN 12 655 - -
Lja6g0212 678 MobiDBLite consensus disorder prediction 647 678 - -
Lja6g0212 678 MobiDBLite consensus disorder prediction 34 61 - -
Lja6g0212 678 Pfam Dual specificity phosphatase, catalytic domain 124 254 IPR000340 GO:0008138|GO:0016311
Lja6g0212 678 MobiDBLite consensus disorder prediction 472 504 - -
Lja6g0212 678 CDD DSP 117 251 - -
Lja6g0212 678 Gene3D Protein tyrosine phosphatase superfamily 92 258 IPR029021 -
Lja6g0212 678 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 105 258 IPR029021 -
Lja6g0212 678 SUPERFAMILY Actin depolymerizing proteins 262 364 - -
Lja6g0212 678 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 12 655 - -
Lja6g0212 678 ProSitePatterns Tyrosine specific protein phosphatases active site. 200 210 IPR016130 GO:0016311|GO:0016791
Lja6g0212 678 ProSiteProfiles Dual specificity protein phosphatase domain profile. 116 258 IPR020422 GO:0006470|GO:0008138
Lja6g0212 678 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 175 236 IPR000387 GO:0016311|GO:0016791
Lja6g0212 678 Gene3D Severin 267 366 IPR029006 -
Lja6g0212 678 SMART dsp_5 116 255 IPR020422 GO:0006470|GO:0008138
Lja6g0212 678 MobiDBLite consensus disorder prediction 479 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0212 Lja-Chr6 4248396 4251195 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0212 33 152 Protein tyrosine phosphatase (PTP) family AT3G55270 51.493 4.95e-34 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0212 - - lja:Lj6g3v0574850.1 1262.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0774 4 6440089 6442668 Lja6g0212 6 4248396 4251195 PCT