Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0210 ATGAACTACGGCTACACTACAGAATTTCCGACGGATCGGCGTCCCCGGAAAAGGGCTAAATTGGTTTGGGATCTTCCTCAGGGTCAAACCCTCCCAAAGGCTCATTCGGGATGGTATTGTGGACAAGAGGTTCCTAATGTGGCAACAAGCAATGGAGTGCCACGGGTACAACCTGACCATGCTGGTCTTTTTGTAAATGGATATGCAGAAAAAGGCTCTCCCCAATGGCGAGATGATGACAAAGATGGACATTACATGTTTGCACTTGGAGACAATTTAACATCTCGGTATAAGATCCTCAGGAAAATTGGTGAAGGGACTTTTGGTCAGGTTCTAGAATGCTGGGATAGAGAAACGAGGGAGCTGGTTGCCATAAAAGTTGTGCGTAGTATTAAGAAATATCGTGAAGCAGCAATGTTAGAAGTTGATGTGCTCCAATTGGTTGGGAAGTATGACAAGAATGGCAGCCGCTGTGTTCAAATACGCAACTGGTTTGACTACCGTAACCATATTTGCATTGTATTTGAGATGCTTGGACCAAGCTTATATGATTTTCTTCGGAAGAACAATTATCGCCCATTTCCGGTTGATCTTGTCCGTGAGCTTGGCAGGCAACTGTTGGAATGTGTAGCATTCATGCATGATTTGCGCCTCATCCACACAGACTTGAAGCCTGAAAATATACTTTTTATTTCCTCAGAATATGTAGTTCCTGACTACAAGGTTACATTCCGGTCACCAAAAGATCCCATCTCTTTTAAGAGACTGCCAAAGTCAAGTGCTATTAAGGTTATCGACTTTGGTAGTACGGCCTATGAGCACCAAGGTCACAACTATATTGTCTCTACTAGGCATTATCGGGCACCTGAGGTTATTCTCGGACTTGGGTGGAGTTCTCCTTGTGACATATGGAGTGTTGGATGCATTTTGATGGAGTTGTGCTCGGGAGAAGCTTTGTTTCAGACGCATGAGAATTTGGAGCACCTAGCCATGATGGAGAGGGTTTTAGGCCCTTTACCACAGCACATGTTGAAAAGAGCAGACCGGCTTGGAGAGAAGTATGTCAGAAGGGGTAGACTGAACTGGCCTGAAGGAGCAGTCTCTCGAGAAAGCATCAAGGCAGTCTTGAAACTGCCTCGTCTTCCTAATCTGGTGATGCAGCATGTGGATCACTCTGCTGGGGATCTTCTTGATCTCTTGCAGGGCCTTCTTCGATTTGATCCCTTCTGCAGGCTAAAGGCCCACGAAGCGCTCAGGCATCCCTTTTTTACCAGGGAGCATTACCAGAGATTTTAA 1296 0.4568 MNYGYTTEFPTDRRPRKRAKLVWDLPQGQTLPKAHSGWYCGQEVPNVATSNGVPRVQPDHAGLFVNGYAEKGSPQWRDDDKDGHYMFALGDNLTSRYKILRKIGEGTFGQVLECWDRETRELVAIKVVRSIKKYREAAMLEVDVLQLVGKYDKNGSRCVQIRNWFDYRNHICIVFEMLGPSLYDFLRKNNYRPFPVDLVRELGRQLLECVAFMHDLRLIHTDLKPENILFISSEYVVPDYKVTFRSPKDPISFKRLPKSSAIKVIDFGSTAYEHQGHNYIVSTRHYRAPEVILGLGWSSPCDIWSVGCILMELCSGEALFQTHENLEHLAMMERVLGPLPQHMLKRADRLGEKYVRRGRLNWPEGAVSRESIKAVLKLPRLPNLVMQHVDHSAGDLLDLLQGLLRFDPFCRLKAHEALRHPFFTREHYQRF* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0210 431 ProSiteProfiles Protein kinase domain profile. 97 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0210 431 PANTHER KINASE AFC1 1 430 - -
Lja6g0210 431 ProSitePatterns Protein kinases ATP-binding region signature. 103 133 IPR017441 GO:0005524
Lja6g0210 431 SUPERFAMILY Protein kinase-like (PK-like) 84 427 IPR011009 -
Lja6g0210 431 Gene3D Phosphorylase Kinase; domain 1 84 177 - -
Lja6g0210 431 Gene3D Transferase(Phosphotransferase) domain 1 151 423 - -
Lja6g0210 431 Pfam Protein kinase domain 97 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g0210 431 CDD PKc_CLK 84 423 - -
Lja6g0210 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Lja6g0210 431 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 430 - -
Lja6g0210 431 SMART serkin_6 97 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0210 Lja-Chr6 4234635 4238457 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0210 97 423 Core Cell Cycle Gene Families AT1G76540 26.036 6.93e-28 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Lja6g0210 Pkinase 1.2e-47 CL0016