Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0200 ATGGCACTTAGAAAAAGAAATTTGCACCAAGTGAAGCATCCATTCAATGCTTATGCATTTGAGGCTTTTGTGTTTGGCTCATGGAAACCCGTGAAGTTCATTAAAATTGAATCAGGAAGGGTGACCTTTCATTTTGTGGATAATCATGAGATATACATAGAGAAAGGTTTTTCGGACTTGCGAACAAGGTCAACGATAGCTACTTTTGCAGACATGCGAATAAGGTCAAGGAAAGCTACTGTATCTGATTGCCTATCCTTCTTGCGGTGTGGGATTAATGTGTGTGTGTTATCAACCTTTCAAAGCAGTGATGATTCGAATCAATCAAACTCTATTCCGGTGTGGGCTGATGCTAAAATAGTTTCCATTGAGAGAAAGCCCCACAACCCTGAATGCTCATGTGAGTATCATGTAATCTTTTATACAAATCAAGGTTCCCTTGGTTCAAATCAAAATACTCTGAGTAAGGATTTCAAAGTTATTGGGTTAAATCAAATTTCTATCCTTCAAAGGCTTGGATGTAAAAGCCTTGAAGATCAACCATTTCGGTGGGACTCATCAGAAAACTGCACCAAGAGACCACAAACGAGGTTGTCCTTAAGAAAGTTTGTCTGCGACATTTCATTGCTAGCTGCTTTATCACTTGTGAAGAACATGTCCTTCTGTGTGAGATCAGAGCAAAATAAGATTCTCTACCAAATCATGGAAAAGGATACTACTAACTCTGATTTTCACATCAAATCTATGAACTTCAAACTAAAAGGTGGCAAATCACTGCCCTCTATTTTTGAACTTGCCACATGGAGAATTGTCCCTGCTATGCAAAATAATGAAGTACAAGTGTTACCACCATTACGACGTTCGACACGTCGAATCAAGAATCCTGAATTTTACTTGGGCTATTGTGATGTTGGTTCAAGTTCTGTAATTCAAACTCGGAAATATAAGGTGGACACGAGCAAAAATGATGACAAGTTGGCACTAGTGAATTACACTACTGAAGGGGGTGTTGGAACTAGTGTTCAAAAGGGTTGTGATGCTGATGCCATTGAAAACGAACATATAGAACCAATTTCTACTGTTCTAGCTCCTAAGAAAGGTGGTTTAGATGCTCTTGAACCTCGCATTCTCCATGAAAGTGGTCAATTTTCTTCCCAATTTGTCGATATTTGGGGATCAAACAACAATGATGATACCGGTATGTGTATAAATCAGCCTAGTGGTGATACAAAAGTAGTTGGTGAAACCTCTTCAAGACATTATTATAATCTCAGAAGCGGTAAGAAGTATCAGAGGAAGGATTCATCAAATTCAGATGATATGATGGAAGATCTGGAACCCAAATGGGAGGGGTTGAATTCTAAAATAGGAGCTGAGCGCAAGAGGCGACATGGTTCAGGTTTTTCAAGAAATAGAAATGATGATGACGATGATGGTGGCAATGAAGAACGAGCTCGGAGACGTAGGGCCTTAAATGTAGATGCATCAAAGGAAATGATAGATTCTTACTTGAAGGATATTGATAAATTACCCACAATAGAAGAGGCTCCTATTAATGAGCAATGGAATGAAGCAATCAATTTTGGCAAAGACAAGGAAACTGAGAAAATTCAAAGAGAGGAGCAGGAAGTTTCTGAAATCGATATGTTATGGAGAGAAATGGATGATGCAATGATAGAGAGTTTTCTTCAAGAACAAACAGAGCAGGGTTCAAGTGCTCCAACTAAGGAAGAGACTACTAGATCTTGTGAGCACGATTATAGATTGGATGAGCAACTTGGAATTTATTGCCATAGATGTGGCATTGTGAAGGAAGAAATAAGATATATCATGCCAGGCTTTGCTGATTATGAACCAAAGCCTGATGATCAACAAAAGGTTGATGATGAGCCGAAGGGCGGAGATAATGATATCCCTTTGCTTCCTATATCTGCTGCTTGTGATGAGCTGAAGGGTGAAGATAATGATAATGATATCCCTTTGCTTCCTATATCTGCTGCTTTTGGTGAGCCTATATCCATTGAAAATGACAGCGTTTGGGGATACATTCCTGAACTTGGAGAAAAAATGCTCCTCCACCAAAAGAAAGCTTTTGAGTTTCTTTGGCAAAACATTGTGGGGTCCATAAACCCAACACTTATGGAAGCACAACATGAAAACAGAGGAGGTTGTGTGATATCTCATGCTCCTGGAGCTGGAAAAACATTCCTAACAATTGCGTTTCTTGTTAGCTATTTGAAGTTATTCCCAAACAAAAAACCCTTAATCCTTGCTCCAAAAACCACACTTTACACTTGGTACCAAGAGTTTATCAAGTGGAAGATTCCAATGCCAGTTTACTTGATTCACAGTCGCAGAAGCCAGAGAAATTTTAGTGGAAATGCATTGTCTCTTCCTGGAATTCCAAATCCCAATGAAGATGTCAAGCATACTTTGGATTGCTTGGAAAAGATTCAAAAGTGGCTTGCACACCCAAGTGTTCTAGTCATGGGTTACACTTCATTTTTATCATTAATGCATGAAAATTCAAAGTATGAACACAAAAAGTTCATGGCTAAAGCATTGAGGGAAAGTCCTGGGATTCTTGTGTTGGATGAAGGGCACAATCCAAGAAGCACCAAATCAAGTTTGAGGAAATGGTTGATGAAAGTGAAGACAGAACTGAGAGTACTCCTCTCTGGCACATTGTTTCAGAACAATTTTTGCGAGTATTTTAATACACTTTGCTTAGCAAGACCAAGGTTTGTTCATGAAGTGCTGCAAGAGTTAGATCCAAAATATGTGAAGAGCGAAGCTGAAAACAAAGCTCCCCATTTAGTCGAGTCACGGGCAAGGAAATTCTTCATTGATAAAATTGGGGTGAAAATAGACGCTGGTAATGACAATGTTGAGGAGAAGATGCAGGGTCTGAACTTGTTGAAGAAAATCACAAGTGGTTTCATAGATGTTTATGATAGTGTGAATGCAGATAGTTTACTACCTGGTTTACAAATTTACACCTTGTTGATGAATAACACTGAGAAGCAGAGTGAGATCTTGCAGAAACTGCAGAAGAAAATGAACCGGAGTGGCGGGTACCCTCTTGAGGTAGAGTTTTTGATAACCCTTGTGTCAATACATCCATGGCTTATCTCAACAACAAAATGTGCCAAAAAGTTTTTCTCTTCAAGCCAATTGAAGCAACTAGAAAAATGCAAGTTTGATTTGAAAATAGGGTCAAAGGTGAAATTTGTTTTGAGCCTTGTCTTCCGTGTGGTCAAGATGAAGGAGAAGGTTCTTATCTTTTGTCGCAACCTTGCACCAATGTGGCTGCTTCTGGAGTTGTTTGAGAGGTTCTTCCATTGGAAAGCAGGAACAGAAATCTTGACACTACATGGGGAACAAGAGTTGTTTGAGCGCGGAAAAGTGATAGATAAGTTTGAGGATCGTTGTGGAGCTTCAAAGGTTCTCCTTGCTTCAATCAGCGCTTGTGCGGAAGGGGTTAGTTTGACAGCAGCTTCTCGAGTGATTTTCTTGGACTCTGAGTGGAATCCGTCTAAAACAAAGCAGGCTATTGCACGGGCCTTCCGTCCTGGCCAAGACAAGGTCGTTTATGTTTATCAACTATTAGCAGCTGGATCATTTGAGGAGGATAAATATAGGAAAACCAACTGGAAAGACTGGGTTTCTAGGATGATTTTCAGTGAGGACTTTGTGGAGGACCCTTCCAAATGGCAGGCAAAGAAAATTGAAGATGATGTGCTAAGAGAAATGGCTAAGCTGGATAAGACTAAATCAATCCACCAAATTGTGAAGAATGAGAAGGCTTCAACAAACCTATGA 3822 0.3972 MALRKRNLHQVKHPFNAYAFEAFVFGSWKPVKFIKIESGRVTFHFVDNHEIYIEKGFSDLRTRSTIATFADMRIRSRKATVSDCLSFLRCGINVCVLSTFQSSDDSNQSNSIPVWADAKIVSIERKPHNPECSCEYHVIFYTNQGSLGSNQNTLSKDFKVIGLNQISILQRLGCKSLEDQPFRWDSSENCTKRPQTRLSLRKFVCDISLLAALSLVKNMSFCVRSEQNKILYQIMEKDTTNSDFHIKSMNFKLKGGKSLPSIFELATWRIVPAMQNNEVQVLPPLRRSTRRIKNPEFYLGYCDVGSSSVIQTRKYKVDTSKNDDKLALVNYTTEGGVGTSVQKGCDADAIENEHIEPISTVLAPKKGGLDALEPRILHESGQFSSQFVDIWGSNNNDDTGMCINQPSGDTKVVGETSSRHYYNLRSGKKYQRKDSSNSDDMMEDLEPKWEGLNSKIGAERKRRHGSGFSRNRNDDDDDGGNEERARRRRALNVDASKEMIDSYLKDIDKLPTIEEAPINEQWNEAINFGKDKETEKIQREEQEVSEIDMLWREMDDAMIESFLQEQTEQGSSAPTKEETTRSCEHDYRLDEQLGIYCHRCGIVKEEIRYIMPGFADYEPKPDDQQKVDDEPKGGDNDIPLLPISAACDELKGEDNDNDIPLLPISAAFGEPISIENDSVWGYIPELGEKMLLHQKKAFEFLWQNIVGSINPTLMEAQHENRGGCVISHAPGAGKTFLTIAFLVSYLKLFPNKKPLILAPKTTLYTWYQEFIKWKIPMPVYLIHSRRSQRNFSGNALSLPGIPNPNEDVKHTLDCLEKIQKWLAHPSVLVMGYTSFLSLMHENSKYEHKKFMAKALRESPGILVLDEGHNPRSTKSSLRKWLMKVKTELRVLLSGTLFQNNFCEYFNTLCLARPRFVHEVLQELDPKYVKSEAENKAPHLVESRARKFFIDKIGVKIDAGNDNVEEKMQGLNLLKKITSGFIDVYDSVNADSLLPGLQIYTLLMNNTEKQSEILQKLQKKMNRSGGYPLEVEFLITLVSIHPWLISTTKCAKKFFSSSQLKQLEKCKFDLKIGSKVKFVLSLVFRVVKMKEKVLIFCRNLAPMWLLLELFERFFHWKAGTEILTLHGEQELFERGKVIDKFEDRCGASKVLLASISACAEGVSLTAASRVIFLDSEWNPSKTKQAIARAFRPGQDKVVYVYQLLAAGSFEEDKYRKTNWKDWVSRMIFSEDFVEDPSKWQAKKIEDDVLREMAKLDKTKSIHQIVKNEKASTNL* 1274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0200 1273 MobiDBLite consensus disorder prediction 619 635 - -
Lja6g0200 1273 MobiDBLite consensus disorder prediction 448 490 - -
Lja6g0200 1273 Pfam Helicase conserved C-terminal domain 1075 1191 IPR001650 -
Lja6g0200 1273 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 859 1230 IPR027417 -
Lja6g0200 1273 MobiDBLite consensus disorder prediction 615 638 - -
Lja6g0200 1273 CDD SF2_C_SNF 1066 1203 - -
Lja6g0200 1273 SMART ultradead3 686 922 IPR014001 -
Lja6g0200 1273 Pfam SNF2-related domain 696 918 IPR000330 GO:0005524|GO:0140658
Lja6g0200 1273 Gene3D - 674 948 IPR038718 -
Lja6g0200 1273 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 715 914 IPR014001 -
Lja6g0200 1273 Coils Coil 530 550 - -
Lja6g0200 1273 Gene3D - 996 1272 IPR027417 -
Lja6g0200 1273 MobiDBLite consensus disorder prediction 427 443 - -
Lja6g0200 1273 SMART helicmild6 1107 1192 IPR001650 -
Lja6g0200 1273 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 689 916 IPR027417 -
Lja6g0200 1273 MobiDBLite consensus disorder prediction 424 443 - -
Lja6g0200 1273 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 19 1271 - -
Lja6g0200 1273 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 19 1271 IPR044567 GO:0080188
Lja6g0200 1273 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1080 1244 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0200 Lja-Chr6 3893793 3899000 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0200 1102 1210 RAD5 or RAD16-like Gene Family AT5G05130 40.000 1.38e-11 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja6g0200 SNF2_N 8.2e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0200 K10875 - gmx:100811703 1276.15